Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 2,736,976 – 2,737,081 |
Length | 105 |
Max. P | 0.987521 |
Location | 2,736,976 – 2,737,081 |
---|---|
Length | 105 |
Sequences | 6 |
Columns | 114 |
Reading direction | reverse |
Mean pairwise identity | 71.01 |
Mean single sequence MFE | -28.88 |
Consensus MFE | -12.77 |
Energy contribution | -12.97 |
Covariance contribution | 0.20 |
Combinations/Pair | 1.24 |
Mean z-score | -2.41 |
Structure conservation index | 0.44 |
SVM decision value | 2.08 |
SVM RNA-class probability | 0.987521 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 2736976 105 - 20766785 C--AGUUUUC-GUUCAUGAUAAAAAUGAGCGUCGGAAAUGCGAAUAUAAAUUCAGCCAUAUCUGAUGUACAAGUGUACAUCUG----ACCGGGAC--ACUAGGAAUGGGAUUGG (--((.(..(-((((..........((.((((((((.((((((((....)))).).))).)))))))).))(((((...((..----...)).))--)))..)))))..)))). ( -27.00) >DroSec_CAF1 21107 105 - 1 C--AGUUUUG-GUUCAUGAUAAAAAUGAGCGUCGGAAAUGCGAAUAUAAAUUCAGCCAUAUCUGAUGUACAAGUGUACAUCUG----ACCGGGGG--ACUGGGAAUGGGUUUGG .--.......-((((((.......)))))).(((......)))...((((((((..(...((.(((((((....))))))).)----)((((...--.)))))..)))))))). ( -30.80) >DroSim_CAF1 8080 105 - 1 N--NNNNNNN-NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAUUCAGCCAUAUCUGAUGUACAAGUGUACAUCUG----ACCGGGGG--ACUGGGUAUGGGAUUGG .--.......-............................................((((((..(((((((....)))))))..----.((((...--.))))))))))...... ( -23.20) >DroEre_CAF1 12375 92 - 1 C--AGUUUUC-GUUCAUGAUAAAAAUGAGCGUCGGAAAUGCGAAUAUAAAUUCAGCCAUAUCUGAUGUACAAGUGUACAUCUG----ACCGGGGG--ACUG------------- (--((((..(-((((((.......))))))..(((....((((((....)))).))....((.(((((((....))))))).)----)))))..)--))))------------- ( -30.50) >DroWil_CAF1 5258 112 - 1 CGGGCUUUUCGGUUCAUGAUAAAAAUGAGCGUCGGAAAUGCGAAUAUAAAUUUUGCCAUAUCUGAUGUACAACUGUUCAUAUACAUGUUUGUGUGUGUGUGAGAGUUUGUUU-- (((((((..((((((((.......))))((((((((.(((((((.......)))).))).))))))))...)))).((((((((((......)))))))))))))))))...-- ( -32.30) >DroYak_CAF1 21853 105 - 1 C--AGUUUUC-GUUCAUGAUAAAAAUGAGCGUCGGAAAUGCGAAUAUAAAUUCAGCCAUAUCUGAUGUACAAGUGUACAUCUG----ACCGGGGG--AUUGGGAUUGGGAAUGG (--((((..(-((((((.......))))))..(((....((((((....)))).))....((.(((((((....))))))).)----)))))..)--))))............. ( -29.50) >consensus C__AGUUUUC_GUUCAUGAUAAAAAUGAGCGUCGGAAAUGCGAAUAUAAAUUCAGCCAUAUCUGAUGUACAAGUGUACAUCUG____ACCGGGGG__ACUGGGAAUGGGAUUGG ...........((((((.......)))))).................................(((((((....))))))).......((((......))))............ (-12.77 = -12.97 + 0.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:40:15 2006