Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 16,253,396 – 16,253,486 |
Length | 90 |
Max. P | 0.992436 |
Location | 16,253,396 – 16,253,486 |
---|---|
Length | 90 |
Sequences | 4 |
Columns | 90 |
Reading direction | forward |
Mean pairwise identity | 64.24 |
Mean single sequence MFE | -21.93 |
Consensus MFE | -14.65 |
Energy contribution | -13.16 |
Covariance contribution | -1.50 |
Combinations/Pair | 1.56 |
Mean z-score | -1.73 |
Structure conservation index | 0.67 |
SVM decision value | 2.33 |
SVM RNA-class probability | 0.992436 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 16253396 90 + 20766785 AUUCGGGACUUGGUCGGUUGGUGAGCAAUGAUGAUGUUUUGGCAUUCUCAUUUCAUCGUUUUUAUUUUCCUUUCGGUGGAAUGAGGACAG ..(((((((.(.((((.(((.....))))))).).)))))))..((((((((((((((...............))))))))))))))... ( -24.96) >DroSec_CAF1 33474 82 + 1 UUUCGGGACUUGGUU----GGUGGACAAUGAUGAUGUUUUGGCAUUCUCAUUUCGCCGUUUUUAUUUUCCUUUCGGUGGAAUGAGG---- ..(((((((.(.(((----(.....)))).)....)))))))....((((((((((((...............)))))))))))).---- ( -23.56) >DroEre_CAF1 38692 72 + 1 AUUUGGGACUUCG--------UAGGCAAUGAUGAUGUUUUGGCAUUUUCAUUUCGCCG----------UUUUUUUGUGGAAUGAGGGUUC ..(..((((.(((--------(........)))).))))..).(((((((((((((..----------.......))))))))))))).. ( -16.70) >DroAna_CAF1 12103 72 + 1 AUCCUGGACUCGGG--ACU-AGGAGCCACGAUGAUGUUUUGGCAUUUUCAUUUCGGCCAUU-------------GUUGGGAUGGGACC-- .((((((.......--.))-))))((((.(((...))).))))..(..(((..((((....-------------))))..)))..)..-- ( -22.50) >consensus AUUCGGGACUUGGU______GUGAGCAAUGAUGAUGUUUUGGCAUUCUCAUUUCGCCGUUU_______CCUUUCGGUGGAAUGAGG_C__ ..((..(((..........................)))..))...(((((((((((((...............))))))))))))).... (-14.65 = -13.16 + -1.50)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:33:53 2006