Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 16,241,157 – 16,241,272 |
Length | 115 |
Max. P | 0.560942 |
Location | 16,241,157 – 16,241,272 |
---|---|
Length | 115 |
Sequences | 4 |
Columns | 115 |
Reading direction | forward |
Mean pairwise identity | 78.95 |
Mean single sequence MFE | -14.82 |
Consensus MFE | -7.01 |
Energy contribution | -8.39 |
Covariance contribution | 1.38 |
Combinations/Pair | 1.17 |
Mean z-score | -2.44 |
Structure conservation index | 0.47 |
SVM decision value | 0.05 |
SVM RNA-class probability | 0.560942 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 16241157 115 + 20766785 CAUUUAAAACACAUGUACAUUUUGGCUAAAUCAACAAGCCAAACCAAACAAGUCAACCAAGUAAUCAUACAAAGAAAAUAAAGUGACAAUUAUAUGUUAUUAAAAUAUUACCAAA ..(((((...(((((((...(((((((.........)))))))........((((.........((.......))........))))...)))))))..)))))........... ( -15.33) >DroSec_CAF1 21347 112 + 1 CAU--GGUACACAUGUACAUU-UGGCUAAAUCAACAAGCCAAACCAAACAAGUCAACCAAGUAAUCAUACAAUGAAAAUAAAGUGACAAUUACAUGUUAUUAAAAUAUUAUCAAA ..(--((((.(((((((..((-(((((.........)))))))........((((.........((((...))))........))))...))))))))))))............. ( -19.73) >DroSim_CAF1 21617 113 + 1 CAU--GGUACACAUGUACAUUUUGGCUAAAUCAACAAGCCAAACCAAACAAGUCAACCAAGUAAUCAUGCAAUGAAAAUAAAGUGACAAUUAUAUGUUAUUAAAAUAUUACCCAA ..(--(((..((.(((....(((((((.........)))))))....))).))..)))).((((((((...))))......(((((((......)))))))......)))).... ( -18.50) >DroEre_CAF1 26465 99 + 1 --------------UUUAAUUUUUGCUAAACUAACAAGCCCAGCCAAACAAGUCAACCCAUUAAUGAUACCAAGCAAUUACACUGGCCAUUACAA--UUUAAAAAUAUUUCACAA --------------....(((((((((.........)))...((((.....((((.........))))...((....))....))))........--...))))))......... ( -5.70) >consensus CAU__GGUACACAUGUACAUUUUGGCUAAAUCAACAAGCCAAACCAAACAAGUCAACCAAGUAAUCAUACAAAGAAAAUAAAGUGACAAUUACAUGUUAUUAAAAUAUUACCAAA ..........(((((((...(((((((.........)))))))........((((............................))))...))))))).................. ( -7.01 = -8.39 + 1.38)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:33:46 2006