Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 16,240,347 – 16,240,439 |
Length | 92 |
Max. P | 0.746729 |
Location | 16,240,347 – 16,240,439 |
---|---|
Length | 92 |
Sequences | 4 |
Columns | 93 |
Reading direction | forward |
Mean pairwise identity | 73.37 |
Mean single sequence MFE | -22.23 |
Consensus MFE | -8.30 |
Energy contribution | -9.05 |
Covariance contribution | 0.75 |
Combinations/Pair | 1.17 |
Mean z-score | -2.77 |
Structure conservation index | 0.37 |
SVM decision value | 0.46 |
SVM RNA-class probability | 0.746729 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 16240347 92 + 20766785 UAGAAAUUUCUUUAAGCUAUGACAUUGAUUAAAUUUAAAAGCUGAUCAAUGCUCUUAGCUUCAGUG-GGAAUUCCCAAAGGACUUUUCUCGCC .(((((..(((((((((((.(((((((((((...........))))))))).)).))))))...((-((....)))))))))..))))).... ( -27.50) >DroSec_CAF1 20596 82 + 1 CAGAAUUUUCUUUU---------CUUGAUUAAAUUUGAGAGCUGAUCAAUGC--UUAGCUUUAGCGGGGAAUUCCCAUAGGACAUUUCUCGCC .((((.......))---------))............((((((((.......--)))))))).((((((((((((....))).))))))))). ( -20.70) >DroSim_CAF1 20874 81 + 1 CAGAAUUUUCUUUU---------CUUGAUUAAAUUUGAGAGCUGAUCGAUGC--UUAGCUUCAGUG-GGAAUUCCCAUAGGAAUUUUCUCGCC .((((..(((((.(---------((..(......)..)))(((((.......--)))))....(((-((....))))))))))..)))).... ( -19.80) >DroYak_CAF1 33477 72 + 1 C-GAAU-----------------AUUUCUUGAACAAGGAAGCCGAUCGAAGC--UUAGCUUUAGUU-GGCAUUCCCAAAGGACUUUUCUUGCC .-(((.-----------------..(((((......((((((((((..((((--...))))..)))-))).))))..)))))...)))..... ( -20.90) >consensus CAGAAUUUUCUUUU_________AUUGAUUAAAUUUGAAAGCUGAUCAAUGC__UUAGCUUCAGUG_GGAAUUCCCAAAGGACUUUUCUCGCC .....................................((((((((.........)))))))).(((.((((.(((....)))...))))))). ( -8.30 = -9.05 + 0.75)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:33:45 2006