Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 2,736,833 – 2,736,936 |
Length | 103 |
Max. P | 0.676779 |
Location | 2,736,833 – 2,736,936 |
---|---|
Length | 103 |
Sequences | 5 |
Columns | 117 |
Reading direction | forward |
Mean pairwise identity | 86.99 |
Mean single sequence MFE | -31.22 |
Consensus MFE | -22.55 |
Energy contribution | -22.31 |
Covariance contribution | -0.24 |
Combinations/Pair | 1.04 |
Mean z-score | -1.84 |
Structure conservation index | 0.72 |
SVM decision value | 0.30 |
SVM RNA-class probability | 0.676779 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 2736833 103 + 20766785 CUGGCGGGCAUCCUGCCACCGCCACCGGCUCCG------------GA-CU-GCAAAUGCAGUGCAGCCAUUAUGUUUAUCCUGCCACACAUACUGCCAUCUGCCGGGUACACUACCC .((((((((.....))..))))))(((((....------------.(-((-((....)))))((((....(((((............))))))))).....)))))........... ( -33.20) >DroSec_CAF1 20993 97 + 1 CUGGCGGGCAUCCUGCCACCGC------CUCCG------------GA-CU-GCAAAUGCAGUGCAGCCAUUAUGUUUAUCCUGCCACACAUACUGCCAUCUGCCGGGCACACUACCC .(((((((...)))))))..((------(..((------------((-((-((....)))))((((....(((((............)))))))))......))))))......... ( -29.30) >DroSim_CAF1 7955 97 + 1 CUGGCGGGCAUCCUGCCACCGC------CUCCG------------GA-CU-GCAAAUGCAGUGCAGCCAUUAUGUUUAUCCUGCCACACAUACUGCCAUCUGCCGGGCACACUACCC .(((((((...)))))))..((------(..((------------((-((-((....)))))((((....(((((............)))))))))......))))))......... ( -29.30) >DroEre_CAF1 12282 93 + 1 CUGGCGGGCAUCCUGCCACCGC------CACUG------------GCUCC-GCAAAUGCAGUGCAGCCAUUAUGUUUAUCCUGCCACACAUACUGCCAUCUGCCGGGCACAC----- .((((((((.....))..))))------))...------------((((.-(((.(((((((((((..............)))).......)))).))).))).))))....----- ( -29.05) >DroYak_CAF1 21720 111 + 1 CUGGCGGGCAUCCUGCCACCGC------CACUGCCAGUGCCACUGCCUCCGGCAAAUGCAGUGCAGCCAUUAUGUUUAUCCUGCCACACAUACUGCCAUCUGCCGGGCACACUACAC .((((((((.....))..))))------)).....((((....((((..(((((.(((((((((((..............)))).......)))).))).))))))))))))).... ( -35.25) >consensus CUGGCGGGCAUCCUGCCACCGC______CUCCG____________GA_CU_GCAAAUGCAGUGCAGCCAUUAUGUUUAUCCUGCCACACAUACUGCCAUCUGCCGGGCACACUACCC .(((((((...)))))))..............................((.(((.(((((((((((..............)))).......)))).))).))).))........... (-22.55 = -22.31 + -0.24)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:40:14 2006