Locus 4979

Sequence ID 2R_DroMel_CAF1
Location 16,229,880 – 16,229,973
Length 93
Max. P 0.986269
window7972

overview

Window 2

Location 16,229,880 – 16,229,973
Length 93
Sequences 5
Columns 109
Reading direction reverse
Mean pairwise identity 80.71
Mean single sequence MFE -18.46
Consensus MFE -14.32
Energy contribution -14.76
Covariance contribution 0.44
Combinations/Pair 1.05
Mean z-score -2.48
Structure conservation index 0.78
SVM decision value 2.04
SVM RNA-class probability 0.986269
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 16229880 93 - 20766785
C------AUCAUUUAAAUUCGCAAUUGCCCAAGCAAUCAA---AAGCCCACAAAAAAAAAUUAACUAAUACCCGCGAUAUG-------GGACCAGUAAACUUGGUCCAU
.------...........((((.(((((....)))))...---..(....)......................))))....-------(((((((.....))))))).. ( -16.40)
>DroSec_CAF1 10509 78 - 1
A------AUUAUUUAAA-UCGCAGUUGCCCAAGCAAUCAA-----------------AAAUUAACUAAUACCCGCGAUAUG-------GGACCAGUAAACUUGGUCCAU
.------.........(-((((.(((((....)))))...-----------------..(((....)))....)))))...-------(((((((.....))))))).. ( -18.00)
>DroSim_CAF1 10831 97 - 1
AAUUUAAAUUAUUUAAA-UCGCAGUUGCCCAAGCAAUCAAAAAAAGCCCACAA----AAAUUAACUAAUACCCGCGAUAUG-------GGACCAGUAAACUUGGUCCAU
................(-((((.(((((....)))))........(....)..----................)))))...-------(((((((.....))))))).. ( -18.00)
>DroEre_CAF1 15473 95 - 1
C------AUCAUUUAAA-UCGCAGUUUCCAAAGCAAUCAA---AGUCCCACAA----AAAUUAGCUAAUACCCGCGAUAUGGGAUGUGGGACCAGUAAACUUGGUCCAU
.------..........-.(((.(((.....)))......---.((((((...----......((........))....)))))))))(((((((.....))))))).. ( -19.72)
>DroYak_CAF1 22159 88 - 1
C------AUCAUUUAAA-UCGCAGUUCCGCAAGCAAUCAA---AGUCGCACAA----AUAUGAACUAAUAUCUGCGAUAUG-------GGACCAGUAAACUUGGUCCAU
.------.........(-((((((....((..((......---.)).))....----((((......)))))))))))...-------(((((((.....))))))).. ( -20.20)
>consensus
C______AUCAUUUAAA_UCGCAGUUGCCCAAGCAAUCAA___AAGCCCACAA____AAAUUAACUAAUACCCGCGAUAUG_______GGACCAGUAAACUUGGUCCAU
..................((((.(((((....)))))......................(((....)))....))))...........(((((((.....))))))).. (-14.32 = -14.76 +   0.44)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:33:38 2006