Locus 4978

Sequence ID 2R_DroMel_CAF1
Location 16,228,258 – 16,228,369
Length 111
Max. P 0.751324
window7971

overview

Window 1

Location 16,228,258 – 16,228,369
Length 111
Sequences 4
Columns 113
Reading direction reverse
Mean pairwise identity 91.52
Mean single sequence MFE -26.32
Consensus MFE -20.68
Energy contribution -20.74
Covariance contribution 0.06
Combinations/Pair 1.07
Mean z-score -1.91
Structure conservation index 0.79
SVM decision value 0.48
SVM RNA-class probability 0.751324
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 16228258 111 - 20766785
UCAAUUAAAUGCUUCUCGGAAGCGUUUUAAUUUGAAAAACUGGAACGGCUUUAA--GCGAGUCUUACUUUCCGUCUGUGCCGUUUCUGUUUCACUAUACUUUAUUUCGUUUUU
((((..(((((((((...)))))))))....)))).((((.((((((((..((.--.((............))..)).)))))))).))))...................... ( -26.30)
>DroSec_CAF1 8875 111 - 1
UCAAUUAAAUGGUUCUCGGAAGCGUUUUAAUUUGAAGAACUGGAACGGCUUUAA--GCCAGUCUUACUUUCCGUCUGAGCCGUUUCUGUUUCACUAUACUUUAUUUCGUUGAU
(((((.(((((((.....((((((((((.......))))).((((((((((...--((.((.....))....))..)))))))))).))))).....)))..)))).))))). ( -25.30)
>DroSim_CAF1 9190 111 - 1
UCAAUUAAAUGGUUCUCGGAAGCGUUUUAAUUUGAAGAACUGGAGCGGCUUUAA--GCCAGUCUUACUUUCCGUCUGAGCCGUUUCUGUUUCACUAUACUUUAUUUCGUUGGU
(((((.(((((((.....((((((((((.......))))).((((((((((...--((.((.....))....))..)))))))))).))))).....)))..)))).))))). ( -24.40)
>DroYak_CAF1 20518 112 - 1
UCAAUUAAAUGGUUCUCGGAAGCGUUUUAAUUUGAAAAACUGGAACGGCUUUAAUGGCGCGUCUUACUUUCCGUUUGAGCCGUUUCUGUUUCAGUAUAUUUAAUUUAUUUCU-
..(((((((((...((..((((((((((.......))))).((((((((((.(((((...(.....)...))))).)))))))))).)))))))..))))))))).......- ( -29.30)
>consensus
UCAAUUAAAUGGUUCUCGGAAGCGUUUUAAUUUGAAAAACUGGAACGGCUUUAA__GCCAGUCUUACUUUCCGUCUGAGCCGUUUCUGUUUCACUAUACUUUAUUUCGUUGUU
((((..(((((.(((...))).)))))....)))).((((.((((((((((........((.....))........)))))))))).))))...................... (-20.68 = -20.74 +   0.06)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:33:38 2006