Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 16,219,938 – 16,220,038 |
Length | 100 |
Max. P | 0.991303 |
Location | 16,219,938 – 16,220,038 |
---|---|
Length | 100 |
Sequences | 5 |
Columns | 110 |
Reading direction | forward |
Mean pairwise identity | 77.53 |
Mean single sequence MFE | -38.18 |
Consensus MFE | -23.12 |
Energy contribution | -23.76 |
Covariance contribution | 0.64 |
Combinations/Pair | 1.21 |
Mean z-score | -2.53 |
Structure conservation index | 0.61 |
SVM decision value | 2.26 |
SVM RNA-class probability | 0.991303 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 16219938 100 + 20766785 ----GUGGGUGGGUGAGUGGCGCUUCCGCUACGAAUUGAUUUGCUCCACUUG-AGGAGCACCAU-----CACAGCUCCUGGCAAAAUCCAGCCCACUUAAUUAAACCAGC ----((((((((((((((((((....)))))).........((((((.....-.))))))...)-----))).((.....)).....))).))))).............. ( -36.30) >DroSec_CAF1 975 93 + 1 GU--------GGGUGAGUGGGGCUUCCGCUUCGAAUUGAUUUGCUCCACUCG-AGGAGCUG--------UGCUGGUGCUGCGAAAAUCCAACCCACUUAAUUAAACCAGC ((--------(((((((((((((.....(........)....))))))))).-.(((....--------(((.......)))....))).)))))).............. ( -33.30) >DroSim_CAF1 998 101 + 1 GUGUGUGAGUGGGUGAGUGGGGCUUCCGCUUCGAAUUGAUUUGCUCCACUCG-AGGAGCUG--------UGCUGGUGCUGCGAAAAUCCUGCCCACUUAAUUAAACCAGC .....((((((((((((((((((.....(........)....))))))))).-((((....--------(((.......)))....)))))))))))))........... ( -38.00) >DroEre_CAF1 5749 103 + 1 ------GAGUGGGUGAGUGGGGCAUCCGCCUCGAAUUGAUUUGCUCCACUCG-AGGAGCUGGUGGGGAAGUAGGGCGGUGGGAAAGUACAGCCCACUUAAUUAAACCAGC ------(((((((..((((((((....)))))......)))..).)))))).-....((((((....((((.((((.(((......))).))))))))......)))))) ( -42.30) >DroYak_CAF1 12097 99 + 1 ------GAGUGGGUGUGUGGGGCAUCCGCUUUGAAUUGAUUUGCUCCACUUGGUGGAGCGGGCG-----UUUUGGGGGUGGGCGAAUACAGCCCACUUAAUUAAACCAGC ------((((((((((.....))))))))))......(.((((((((((...)))))))))))(-----(((...((((((((.......))))))))....)))).... ( -41.00) >consensus ______GAGUGGGUGAGUGGGGCUUCCGCUUCGAAUUGAUUUGCUCCACUCG_AGGAGCUG________UGCUGGUGCUGGGAAAAUCCAGCCCACUUAAUUAAACCAGC ......((((((((...((((((....)))))).........(((((.......)))))...............................))))))))............ (-23.12 = -23.76 + 0.64)
Location | 16,219,938 – 16,220,038 |
---|---|
Length | 100 |
Sequences | 5 |
Columns | 110 |
Reading direction | reverse |
Mean pairwise identity | 77.53 |
Mean single sequence MFE | -31.29 |
Consensus MFE | -19.08 |
Energy contribution | -19.28 |
Covariance contribution | 0.20 |
Combinations/Pair | 1.00 |
Mean z-score | -2.18 |
Structure conservation index | 0.61 |
SVM decision value | 1.46 |
SVM RNA-class probability | 0.955857 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 16219938 100 - 20766785 GCUGGUUUAAUUAAGUGGGCUGGAUUUUGCCAGGAGCUGUG-----AUGGUGCUCCU-CAAGUGGAGCAAAUCAAUUCGUAGCGGAAGCGCCACUCACCCACCCAC---- ..............(((((((((......)))).....(((-----((((((((((.-.....))))).............((....)))))).))))...)))))---- ( -35.30) >DroSec_CAF1 975 93 - 1 GCUGGUUUAAUUAAGUGGGUUGGAUUUUCGCAGCACCAGCA--------CAGCUCCU-CGAGUGGAGCAAAUCAAUUCGAAGCGGAAGCCCCACUCACCC--------AC ..............((((((.((..((((((.((....)).--------..(((((.-.....))))).............))))))..)).))))))..--------.. ( -30.60) >DroSim_CAF1 998 101 - 1 GCUGGUUUAAUUAAGUGGGCAGGAUUUUCGCAGCACCAGCA--------CAGCUCCU-CGAGUGGAGCAAAUCAAUUCGAAGCGGAAGCCCCACUCACCCACUCACACAC .............((((((..((..((((((.((....)).--------..(((((.-.....))))).............))))))..))......))))))....... ( -29.20) >DroEre_CAF1 5749 103 - 1 GCUGGUUUAAUUAAGUGGGCUGUACUUUCCCACCGCCCUACUUCCCCACCAGCUCCU-CGAGUGGAGCAAAUCAAUUCGAGGCGGAUGCCCCACUCACCCACUC------ ((((((......((((((((.((........)).)))).))))....))))))....-.((((((.(((......((((...))))))).))))))........------ ( -32.80) >DroYak_CAF1 12097 99 - 1 GCUGGUUUAAUUAAGUGGGCUGUAUUCGCCCACCCCCAAAA-----CGCCCGCUCCACCAAGUGGAGCAAAUCAAUUCAAAGCGGAUGCCCCACACACCCACUC------ ((((((........((((((.......))))))........-----.))).(((((((...)))))))............)))((.((.......)).))....------ ( -28.53) >consensus GCUGGUUUAAUUAAGUGGGCUGGAUUUUCCCAGCACCAGAA________CAGCUCCU_CGAGUGGAGCAAAUCAAUUCGAAGCGGAAGCCCCACUCACCCACUC______ ..............(((((................................(((((.......))))).............((....)))))))................ (-19.08 = -19.28 + 0.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:33:30 2006