Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 16,199,047 – 16,199,159 |
Length | 112 |
Max. P | 0.539840 |
Location | 16,199,047 – 16,199,159 |
---|---|
Length | 112 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 90.04 |
Mean single sequence MFE | -27.71 |
Consensus MFE | -20.91 |
Energy contribution | -20.95 |
Covariance contribution | 0.04 |
Combinations/Pair | 1.04 |
Mean z-score | -1.54 |
Structure conservation index | 0.75 |
SVM decision value | 0.01 |
SVM RNA-class probability | 0.539840 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 16199047 112 - 20766785 --AGCUGCAUGAUGCAU-CAACUUGUUCUGCAACGCAUAGCAACUUCGCUCGGUUUUACAAGAAGCCCAACAACUUUGAGGUGUGCAUAAUCCCACAACGCAACU-----ACAUGCUGCA --.((.(((((.(((.(-(((.(((((.(((...))).)))))........((((((....))))))........))))(.((((........)))).))))...-----.))))).)). ( -25.30) >DroSec_CAF1 13283 113 - 1 --AGCUGCAUGAUGCACCCAACUUGUUCCACAUCGCAUGGCAACUUCGCUCGUUUUUACAAGAAGCCAUACAACUUCGAGGUGUGCAUAAUCCCACAACGCAGCU-----ACAUGCUGCA --.........((((((((...((((........((..(....)...))........))))((((........))))..)).))))))...........(((((.-----....))))). ( -27.49) >DroSim_CAF1 13139 113 - 1 --AGCUGCAUGAUGCACCCAACUUGUUCCGCAUCGCAUAGCAACUUCGCUCGGUUUUACAAGAAGCCAUACAACUUCGAGGUGUGCAUAAUCCCACAACGCAGCU-----ACAUGCUGCA --.((((..((((((..............))))))..)))).((((((...((((((....)))))).........))))))(((........)))...(((((.-----....))))). ( -29.64) >DroEre_CAF1 13345 117 - 1 --AGCCGGAUGAUGCAC-CAACUUGUUCUGCAUCGCAUAGCAACUUCCCUCGGUUUUACAAGAAGCCAUACAACUUCGAGGUGUGCAUAAUCCCACAACCCAACUAAAGUACAUGCUGCA --.((.((((.((((((-....(((((.(((...))).)))))....(((((......)..((((........)))))))).)))))).))))..............(((....))))). ( -27.00) >DroYak_CAF1 13895 114 - 1 AAAGCCGCAUGAUGCAG-CAACUUGUUCUGCAUCGCAUAGCAACUUCCCCCGGUUUUACAAGAAGCCAUACAACUUCGAGGUGUGCAUAAUCCCACCAGCCAACU-----ACAUGCUGCA ...((.(((((((((((-.((....)))))))))(((((.(..........((((((....))))))...(......).).)))))...................-----..)))).)). ( -29.10) >consensus __AGCUGCAUGAUGCAC_CAACUUGUUCUGCAUCGCAUAGCAACUUCGCUCGGUUUUACAAGAAGCCAUACAACUUCGAGGUGUGCAUAAUCCCACAACGCAACU_____ACAUGCUGCA ...((.(((((((((...................)))).((((((((....(......)..((((........))))))))).))).........................))))).)). (-20.91 = -20.95 + 0.04)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:33:24 2006