Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 2,730,051 – 2,730,149 |
Length | 98 |
Max. P | 0.987202 |
Location | 2,730,051 – 2,730,149 |
---|---|
Length | 98 |
Sequences | 5 |
Columns | 104 |
Reading direction | reverse |
Mean pairwise identity | 75.05 |
Mean single sequence MFE | -33.16 |
Consensus MFE | -15.48 |
Energy contribution | -15.92 |
Covariance contribution | 0.44 |
Combinations/Pair | 1.22 |
Mean z-score | -2.39 |
Structure conservation index | 0.47 |
SVM decision value | 2.07 |
SVM RNA-class probability | 0.987202 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 2730051 98 - 20766785 GCUUCCAGCCACAAUUGAAUUGGCCAUUAAAGUCAAAUGCGAAUUGAGGAAUGGCUGCUGGCCGGCGGGGGAGUCCUCC------GCCUCCUCCGCAUGCUUCU (((..((((((...((.((((.((.(((.......))))).)))).))...))))))..)))..(((((((((......------..)))))))))........ ( -36.80) >DroSec_CAF1 14081 103 - 1 GCUUGCAGCCACAAUUGAAUUGGCCAUUAAAGUCAAAUGCGAAUUGAGGAAUGGCUGCUGGCCGGCGGGGGAGUCCUCCUCCGCC-CCUCCUCUUCCUGCUUCU (((.(((((((...((.((((.((.(((.......))))).)))).))...))))))).))).(((((((((....)))))))))-.................. ( -40.90) >DroEre_CAF1 5476 79 - 1 GCU-CCAGCCACAAUUGAAUUGGCCAUUAAAGUCAGAUGCGAAUUGAGGAAUGGCUGCUGGCCGGCGGGGGAGUCCUAC------------------------U (((-((.(((.(....)....(((((....(((((..(.(.......).).)))))..))))))))...))))).....------------------------. ( -24.80) >DroYak_CAF1 14242 89 - 1 GCUUUCAGCCACAAUUGAAUUGGCCAUUAAAGUCACAUUUGAAUUGAGGAAUGGCUGCUGGCCGGCGGGGGAGUCCUGCU------CCUCCUC---------CU (((..(((((((((((.((.((((.......))))...)).))))).....))))))..))).((.(((((((.....))------))))).)---------). ( -33.90) >DroAna_CAF1 13395 77 - 1 GCC-AGAGCCACAAUUGAAUUGGCCAUUAAAGUCAAAUGCGAAUUGAGGAAUGGCAG--GGUCCACG---GACUC---------------------AGGCUCUG ..(-((((((............((((((....((((.......))))..)))))).(--((((....---)))))---------------------.))))))) ( -29.40) >consensus GCUUCCAGCCACAAUUGAAUUGGCCAUUAAAGUCAAAUGCGAAUUGAGGAAUGGCUGCUGGCCGGCGGGGGAGUCCUCC_______CCUCCUC_____GCU_CU (((..((((((...((.((((.((.(((.......))))).)))).))...))))))..))).(((......)))............................. (-15.48 = -15.92 + 0.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:40:13 2006