Locus 4968

Sequence ID 2R_DroMel_CAF1
Location 16,192,463 – 16,192,559
Length 96
Max. P 0.967847
window7953

overview

Window 3

Location 16,192,463 – 16,192,559
Length 96
Sequences 6
Columns 104
Reading direction reverse
Mean pairwise identity 70.82
Mean single sequence MFE -23.25
Consensus MFE -9.25
Energy contribution -9.08
Covariance contribution -0.16
Combinations/Pair 1.25
Mean z-score -2.30
Structure conservation index 0.40
SVM decision value 1.62
SVM RNA-class probability 0.967847
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 16192463 96 - 20766785
----GGCCAUUCU--GAAAUUAUAUCGUAUCCAAUCUGCAUAACAAAUG-CAUAACUAGAUGCCCGUUUUCAAGGCCAAAGCCAAUGGGCAAUCA-AAUACGUA
----.........--..........(((((......(((((.....)))-))......((((((((((.....(((....)))))))))).))).-.))))).. ( -21.80)
>DroSec_CAF1 6784 80 - 1
----GGCCAUUCU--GAAAUCAUGUCGGAUUCAAUCUGCAUAACAAAUG-CAGAACCAGAUGUACGUUUUCAAGGCCAAAGCCAAU-----------------A
----((((..(((--((.......))))).....(((((((.....)))-))))...................)))).........-----------------. ( -20.70)
>DroSim_CAF1 6626 80 - 1
----GGCCAUUCU--GAAAUCAUGUCGGAUUCAAUCUGCAUAACAAAUG-CAGAACCAGGUGCACGUUUUCAAGGCCAAAGCCAAU-----------------A
----((((..(((--((.......))))).....(((((((.....)))-))))...................)))).........-----------------. ( -20.70)
>DroEre_CAF1 6711 92 - 1
UGUUGGCCAUUCU---AAAACAUGUCGGGUUCAAUCUGCAUAACAAAUG-CAGAACUCAAAACCCGUUUUCAAGGCCAAGGCC-------AAUCA-AAUACGUA
.(((((((.....---.........((((((...(((((((.....)))-))))......)))))).............))))-------)))..-........ ( -25.73)
>DroYak_CAF1 6925 97 - 1
UGUUGGCCAUUCU--GAAAACAUGUCGCUGCCAAUCUGCAUAGCAAAUG-UGGAACUCAAAGCCCGUUUUCAAGGCCAAAGCCA---GGCAAUCA-AAUACGUA
((...(((....(--((((((.....(((.....((..(((.....)))-..))......)))..))))))).(((....))).---)))...))-........ ( -23.30)
>DroAna_CAF1 6652 101 - 1
UGUCGGGUGUUUUGGGAAACUAUGCCAGAUCCAAUCUGCAUAACAAAUGGCGGAAUGGGAGGCUCGUUUUCAAGGCCGAAGACAA---AAAAUGGGUAUAUGUU
((((....((((((..((.....(((...((((.(((((..........))))).)))).)))...))..))))))....)))).---................ ( -27.30)
>consensus
____GGCCAUUCU__GAAAUCAUGUCGGAUCCAAUCUGCAUAACAAAUG_CAGAACUAGAUGCCCGUUUUCAAGGCCAAAGCCAA_____AAUCA_AAUACGUA
....((((..........................(((((((.....))).))))...........(....)..))))........................... ( -9.25 =  -9.08 +  -0.16)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:33:21 2006