Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 16,188,336 – 16,188,451 |
Length | 115 |
Max. P | 0.625408 |
Location | 16,188,336 – 16,188,451 |
---|---|
Length | 115 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 70.71 |
Mean single sequence MFE | -33.54 |
Consensus MFE | -18.13 |
Energy contribution | -19.02 |
Covariance contribution | 0.89 |
Combinations/Pair | 1.05 |
Mean z-score | -1.59 |
Structure conservation index | 0.54 |
SVM decision value | 0.19 |
SVM RNA-class probability | 0.625408 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 16188336 115 - 20766785 AUAU-----AGAUUGAUAACAAGUAGCAGACCAGUCUGCCUCCAAUUACUGUUCACCUGAAAACCGCGUGGUGGAGCUGGGGGGCACAAGCUUCUCCGAUGGCUUCGGUCAUGGUCAGGC ....-----....(((..(((.((((((((....))))).......)))))))))(((((...((...(((.((((((.(......).)))))).)))(((((....)))))))))))). ( -34.11) >DroSec_CAF1 2048 119 - 1 ACACUUAAUAGAUACGAUACAAGUAGCAGACCAGUCUGCCUCCAAUUACUGCUCACCUGAAACUCGCGUGGUUGAGCUGGG-GGCAGCGGGUUCUCCGAUGGCUUCGGUCAUGGUCAGAC ..........(.(((.......))).).((((...(((((((((......(((((((............)).)))))))))-)))))(((.....)))(((((....))))))))).... ( -39.20) >DroSim_CAF1 2077 92 - 1 ACAC-----------AAAACAAGUAGCAGACCAGUCUGCCUCCAAUUACUGCUCACCUGAAAC----------------GA-ACCAGCGGGUUCUCCGAUGGCUUCGGUCAUGGUCAGGC ....-----------.......(..(((((....)))))..).............(((((...----------------((-(((....))))).((.(((((....)))))))))))). ( -28.60) >DroEre_CAF1 2070 105 - 1 --------UAGUUAUAAAAUAAGUGGCAGACCAGUCUGCUUCCAAUUACUGCUCACCUGAAAUCUC------UGAGCUGGG-GGCAGAGCGUGCUCCGGUGGCUUCGGUCAUGGUCACGC --------..(((((.......))))).......((((((((((......(((((...(....)..------)))))))))-))))))(((((..(((.((((....))))))).))))) ( -37.80) >DroYak_CAF1 2166 95 - 1 ACAA--AAGAGAUGUAAAAUAAAAAGCAGACCAGUCUGCUUCCAAUUACUGCUCACCUGAAAUCUC------CCAG-----------------CUCCGAUGGCUUCGGUCACGGUCAGGC ....--..(((..((((......(((((((....)))))))....))))..))).(((((......------....-----------------..(((.((((....)))))))))))). ( -28.00) >consensus ACAC_____AGAUAUAAAACAAGUAGCAGACCAGUCUGCCUCCAAUUACUGCUCACCUGAAACCCC______UGAGCUGGG_GGCAGAGGGUUCUCCGAUGGCUUCGGUCAUGGUCAGGC .........................(((((....)))))................(((((...............((......))..........(((.((((....)))))))))))). (-18.13 = -19.02 + 0.89)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:33:21 2006