Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 16,184,330 – 16,184,433 |
Length | 103 |
Max. P | 0.692757 |
Location | 16,184,330 – 16,184,433 |
---|---|
Length | 103 |
Sequences | 5 |
Columns | 103 |
Reading direction | reverse |
Mean pairwise identity | 81.14 |
Mean single sequence MFE | -33.80 |
Consensus MFE | -24.84 |
Energy contribution | -24.36 |
Covariance contribution | -0.48 |
Combinations/Pair | 1.30 |
Mean z-score | -1.66 |
Structure conservation index | 0.73 |
SVM decision value | 0.33 |
SVM RNA-class probability | 0.692757 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 16184330 103 - 20766785 CAUCUGGAUCUGGAUCUGGCUUGGGAUCUGGAUCUAGUAUGGUGUCCGAUUCGGUAUCGAUAUCCCCCAGGGACAGUACCGUGACCAAUGGUGACGAUAAGCA ((((((((((..(((((......)))))..))))))).))).((((......(((((.(...((((...))))).)))))((.(((...))).)))))).... ( -36.20) >DroSec_CAF1 28223 103 - 1 CAUCUGGAUCUGGAUCUGUUUUGGGAUCUGGAUCUGAUAUAGUGUCCGAUUCGGUAUCGAUAUCCCCCCGGGACAGCACCGUGACCAACGGUGACGAUAAGCA .(((.(((((..(((((......)))))..))))))))...((..(((...)))(((((...((((...))))...((((((.....)))))).))))).)). ( -35.30) >DroSim_CAF1 28427 103 - 1 CAUCUGGAUCUGGAUCUGUUUUGGGAUCAGGAUCUGAUAUAGUGUCCGAUUCGGUAUCGAUAUCCCCCAGGGACAGCACCGUGACCAACGGUGACGAUAAGCA ...(((((((.((((((((..(.((((....)))).).)))).)))))))))))(((((...((((...))))...((((((.....)))))).))))).... ( -34.90) >DroEre_CAF1 28808 91 - 1 CAUCUGGAUC------------GGGAUCCGGAUCUAGUACAGUGUCUGAUUCGGCAUCGAUAUCCCCCAGGGACAGCACUGUGAUUGAUGGUAGCAACAAGCA ((((((((((------------.(....).)))))).(((((((.(((..(((....)))..((((...))))))))))))))...))))...((.....)). ( -30.10) >DroYak_CAF1 28684 91 - 1 CAUCCGGAUC------------GGGAUCCGGAUCUAGUACGGUGUCUGAUUCGGCAUCGAUAUCUCCCAGGGAGAGCACCGUGAUCGAUGGAAGCGACAAGCA ..(((((((.------------...)))))))((((.((((((((.....(((....)))..(((((...))))))))))))).....)))).((.....)). ( -32.50) >consensus CAUCUGGAUCUGGAUCUG__UUGGGAUCCGGAUCUAGUAUAGUGUCCGAUUCGGUAUCGAUAUCCCCCAGGGACAGCACCGUGACCAAUGGUGACGAUAAGCA .((((((((((.((......)).))))))))))....((((((((.((((.....))))...((((...))))..)))))))).....((....))....... (-24.84 = -24.36 + -0.48)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:33:20 2006