Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 16,183,438 – 16,183,543 |
Length | 105 |
Max. P | 0.609451 |
Location | 16,183,438 – 16,183,543 |
---|---|
Length | 105 |
Sequences | 6 |
Columns | 105 |
Reading direction | reverse |
Mean pairwise identity | 85.20 |
Mean single sequence MFE | -32.55 |
Consensus MFE | -22.13 |
Energy contribution | -23.80 |
Covariance contribution | 1.67 |
Combinations/Pair | 1.00 |
Mean z-score | -2.98 |
Structure conservation index | 0.68 |
SVM decision value | 0.15 |
SVM RNA-class probability | 0.609451 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 16183438 105 - 20766785 AGCGCUCCACCUGCCGUAACCAUAAGCCCAGUCGUGGCACAACCCUCACCGACACCGGUGGCCAUCACGGCCUCCAACUAAAAUCCAGUUCUGGUGGAUCCGUAA .(((.((((((.(((((........((((....).))).......((((((....)))))).....)))))....((((.......))))..))))))..))).. ( -31.60) >DroSec_CAF1 27328 105 - 1 AGCGCUCCACCUGCCGUAACCAUAACCCCGGUCGUGGCACAACCCUCACCAACACCGGUGGCCAUCACGGCCUCCAACUAAAAUCCAGUUCUGGUGGAUCCGUAA .(((.(((((((((((..(((........)))..))))).................((.((((.....)))).)).................))))))..))).. ( -35.90) >DroSim_CAF1 27532 105 - 1 AGCGCUCCACCUGCCGUAACCAUAACCCCGGUCGUGGCACAACCCUCACCAACACCGGUGGCCAUCACGGCCUCCAACUAAAAUCCAGUUCUGGUGGAUCCGUAA .(((.(((((((((((..(((........)))..))))).................((.((((.....)))).)).................))))))..))).. ( -35.90) >DroEre_CAF1 27934 99 - 1 ACCGCUCCACCUGCCGU------AACCCCGGUCGUGGCACAACCCUCACCAACACCGGUGGCCAUCACGGCCUCCAACUAAAAUCCAGCUCUGGUGGAUCCGUAA ((.(.(((((((((((.------.((....))..))))).................((.((((.....)))).)).................)))))).).)).. ( -32.20) >DroYak_CAF1 27801 105 - 1 ACCGCUCCACCUGCCGUAACCGUAACCCCGGUCGUGGCACAACCCCCACCAACACCGGUGGCCAUCACGGCCUCCAACUAAAAUCCAGCUCUGGUGGAUCCGUAA ((.(.(((((((((((..((((......))))..))))).................((.((((.....)))).)).................)))))).).)).. ( -36.20) >DroAna_CAF1 47251 97 - 1 ACGGCUCCAGCUGCCGUAACCU------CAAACGUUCCACCACCUUCGACCGCUCCGGUGGCCAUUGCGGCCUCCAACUAAAGCAUCGUU-UCGUGUCUCCGCA- (((((.......))))).....------.....((.....(((...(((..(((..((.((((.....)))).))......))).)))..-..))).....)).- ( -23.50) >consensus ACCGCUCCACCUGCCGUAACCAUAACCCCGGUCGUGGCACAACCCUCACCAACACCGGUGGCCAUCACGGCCUCCAACUAAAAUCCAGUUCUGGUGGAUCCGUAA .....(((((((((((..((..........))..))))).................((.((((.....)))).)).................))))))....... (-22.13 = -23.80 + 1.67)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:33:17 2006