Locus 4963

Sequence ID 2R_DroMel_CAF1
Location 16,181,323 – 16,181,414
Length 91
Max. P 0.947744
window7947

overview

Window 7

Location 16,181,323 – 16,181,414
Length 91
Sequences 4
Columns 105
Reading direction forward
Mean pairwise identity 65.92
Mean single sequence MFE -21.80
Consensus MFE -13.86
Energy contribution -13.55
Covariance contribution -0.31
Combinations/Pair 1.21
Mean z-score -1.47
Structure conservation index 0.64
SVM decision value 1.37
SVM RNA-class probability 0.947744
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 16181323 91 + 20766785
CUGCGA-UCUGUUUGCC--UUCUUGGCAGGCAGUAAAGUUAUAA--ACACUACAGUGGACACUCGCAUAAUGCCU-UAGACAAUGG-UGUCUU--U-----GUGU
.(((((-.(((((((((--.....)))))))))...........--.(((....))).....)))))....(((.-.(((((....-))))).--.-----).)) ( -26.90)
>DroSec_CAF1 25370 73 + 1
CUGCGA-UGUGUUUGCC--UUUUUGGCAGGCAGUAAAGUUAUAA--ACACUACAGUGGACACUCGCAUAAUG-------------G---------U-----GUUU
.(((((-((((((((((--.....))))))).............--.(((....))).))).))))).....-------------.---------.-----.... ( -20.80)
>DroYak_CAF1 25653 86 + 1
UUGCGA-UUUGUUUGCC--UUUUUGGCAGGCAGUAAAGUUAUAA--ACACAACAGUGGAUACUCGCAAAAUGCCUUUAUACAAUAG---------U-----GUUU
((((((-.(((((((((--.....)))))))))...........--.(((....))).....)))))).........((((....)---------)-----)).. ( -21.20)
>DroAna_CAF1 44649 102 + 1
CUGCGACUUUGCUUGUUUUUUUUUGGCAGGCAUUGAAGUAACAAGACCACUACAGUGAUU-CCCUCUACAGAUCU-UAGC-AAGGUUCAUAUUGGUAAUAUAUUU
.(((..(..((((((((.......))))))))..)..))).....((((.....((((..-.((((((.......-))).-.))).))))..))))......... ( -18.30)
>consensus
CUGCGA_UUUGUUUGCC__UUUUUGGCAGGCAGUAAAGUUAUAA__ACACUACAGUGGACACUCGCAAAAUGCCU_UAGA_AAUGG_________U_____GUUU
..(((....((((((((.......))))))))...............(((....)))......)))....................................... (-13.86 = -13.55 +  -0.31)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:33:16 2006