Locus 4961

Sequence ID 2R_DroMel_CAF1
Location 16,172,651 – 16,172,771
Length 120
Max. P 0.770063
window7945

overview

Window 5

Location 16,172,651 – 16,172,771
Length 120
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 84.58
Mean single sequence MFE -28.56
Consensus MFE -16.86
Energy contribution -18.38
Covariance contribution 1.52
Combinations/Pair 1.08
Mean z-score -2.55
Structure conservation index 0.59
SVM decision value 0.53
SVM RNA-class probability 0.770063
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 16172651 120 - 20766785
CCGUUGCGCCACGGAGUCAAUUGAAAAUCCCACUGCCUAUUUGUGAUUUUAAAUUAAUUAAAUCUAAGUAUAAAUCACAAAUAUCAUUGAUAAUACUGAUAAGAUAGGUGCAUUCGACUC
.((.((((((..(((.((....))...)))((.((..((((((((((((....(((........)))....)))))))))))).)).)).................))))))..)).... ( -27.30)
>DroSec_CAF1 16784 108 - 1
CCGUUGCGCCACGGAGUCAA------------CUGGCUAUUUGUGAUUUUAAAUUACUUAAAUCUAAGUAUAAAUCACAAAUAUCAUUGGAAAAACUGAUAAGAUAGGUGCAUUCGACUC
.((.((((((......((((------------.(((.((((((((((((.....((((((....)))))).))))))))))))))))))).....((....))...))))))..)).... ( -29.40)
>DroSim_CAF1 17276 120 - 1
CCGUUGCGCCACGGAGUCAAUUGAGAAUCCCACUGGCUAUUUGUGAUUUUAAAUUACUAAAAUCUAAGUAUAAAUCACAAAUAUCAUUCGAAAAACUGAUAAGAUAGGUGCAUUCGACUC
.((.((((((..(((.((......)).)))...(((.((((((((((((.....((((........)))).)))))))))))))))....................))))))..)).... ( -29.20)
>DroEre_CAF1 17009 120 - 1
CCGUUGCGCCACGGAGUCAAUUGAAGAUUCCACUGCCUAUACGUGAUUUUAAAUUAGUUACAUCCAAGUAUAGUUCAAAAAUAUUAUUAGAAAUACUGAUAAGAUAGGUGCAUUCGAAUC
.((.((((((..((((((.......)))))).....((((((((((((.......))))))......))))))..........(((((((.....)))))))....))))))..)).... ( -28.80)
>DroYak_CAF1 16981 120 - 1
CCGUUGCGCCACGGAGUCAAUUGAGAAUUGCACCGCCUAUAUCCGAUUUUAAAUGGUUUGAGUUUGAGUAUAAAUCAAAAAUAUUAUUAGAAAUACUGAUAAGAUAGGUGCAUUCGUCUC
((((......))))........((((..((((((..((.((((.((((((.((((((.....(((((.......)))))...)))))).))))).).))))))...))))))....)))) ( -28.10)
>consensus
CCGUUGCGCCACGGAGUCAAUUGAAAAUCCCACUGCCUAUUUGUGAUUUUAAAUUACUUAAAUCUAAGUAUAAAUCACAAAUAUCAUUAGAAAUACUGAUAAGAUAGGUGCAUUCGACUC
.((.((((((...........................((((((((((((....(((........)))....))))))))))))............((....))...))))))..)).... (-16.86 = -18.38 +   1.52)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:33:14 2006