Locus 4960

Sequence ID 2R_DroMel_CAF1
Location 16,169,832 – 16,169,926
Length 94
Max. P 0.974299
window7944

overview

Window 4

Location 16,169,832 – 16,169,926
Length 94
Sequences 5
Columns 94
Reading direction reverse
Mean pairwise identity 94.02
Mean single sequence MFE -27.28
Consensus MFE -23.94
Energy contribution -25.54
Covariance contribution 1.60
Combinations/Pair 1.00
Mean z-score -1.74
Structure conservation index 0.88
SVM decision value 1.73
SVM RNA-class probability 0.974299
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 16169832 94 - 20766785
CGGCGGGCUAGCUUCUCAUCGGAUCCGAUCGGGUGUGCAAAUCAUACAUAUAAACAUAUGUGUUUGAAAGCACGCCAUCCCAAAACGAAACGCG
.((((.(((.((..(((((((....)))).)))...))...(((.(((((((....))))))).))).))).)))).................. ( -29.00)
>DroSec_CAF1 14074 94 - 1
CGGCGGGCUAGCUUCACAUCGAAUCCGAUCGGGUGUGCAAAUCAUACAUAUAAACAUAUGUGUUUGAAAGCACGCCAUCCCAAAACGAAACGCG
.((((.(((.((..(((.((((......))))))).))...(((.(((((((....))))))).))).))).)))).................. ( -27.40)
>DroSim_CAF1 14485 94 - 1
CGGCGGGCUAGCUUCACAUCGGAUCCGAUCGGGUGUGCAAAUCAUACAUAUAAACAUAUGUGUUUGAAAGCACGCCAUCCCAAAACGAAACGCG
..(((...........(((((....)))).)(((((((...(((.(((((((....))))))).)))..)))))))..............))). ( -28.40)
>DroEre_CAF1 14142 90 - 1
CGGCGGGCUAGCUUCUCAUCGGAUCCGAUCGGGUGUGCAAAUCAUACAG----ACACAUGCGUUUGAAAGCACGCCAUCCCAAAACGAAACGCG
.((((.(((.((..(((((((....)))).)))...))........(((----((......)))))..))).)))).................. ( -25.50)
>DroYak_CAF1 14256 90 - 1
CGGCGGGCUAGCUUCUCAUCGGAUCCGAUCGGGUGUGCAAAUCAUACAU----ACACAUGUGUUUGACAGCACGCCAUCCCAAAACGAAACACG
.((((.(((.((..(((((((....)))).)))...))...(((.((((----(....))))).))).))).)))).................. ( -26.10)
>consensus
CGGCGGGCUAGCUUCUCAUCGGAUCCGAUCGGGUGUGCAAAUCAUACAUAUAAACAUAUGUGUUUGAAAGCACGCCAUCCCAAAACGAAACGCG
....(((..........((((....))))..(((((((...(((.(((((((....))))))).)))..)))))))..)))............. (-23.94 = -25.54 +   1.60)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:33:13 2006