Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 16,165,535 – 16,165,633 |
Length | 98 |
Max. P | 0.999932 |
Location | 16,165,535 – 16,165,633 |
---|---|
Length | 98 |
Sequences | 6 |
Columns | 98 |
Reading direction | forward |
Mean pairwise identity | 93.61 |
Mean single sequence MFE | -31.04 |
Consensus MFE | -28.42 |
Energy contribution | -28.62 |
Covariance contribution | 0.19 |
Combinations/Pair | 1.04 |
Mean z-score | -4.43 |
Structure conservation index | 0.92 |
SVM decision value | 4.64 |
SVM RNA-class probability | 0.999932 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 16165535 98 + 20766785 AAAUAAAAUAGCAAAUUACUAAUUUCGCCUUUGGCCUAAGCAACAUGUUGCUGUCAUUAUGAUUAGCUACAUGUUGCCCAAUUUGCUGGCUGCAACAG ........(((((((((.........(((...)))....(((((((((.((((((.....)).)))).)))))))))..))))))))).......... ( -29.70) >DroSec_CAF1 9649 98 + 1 AAAUAAAGUAGCAAAUUACUAAUUUCGCCUUUGGCCUAUGCAACAUGUUGCUGUCAUUAUGAUUAGCUACAUGUUGCCCAAUUUGCUGGCUGCAACAG ......(((((((((((.........(((...)))....(((((((((.((((((.....)).)))).)))))))))..)))))))).)))....... ( -30.20) >DroSim_CAF1 10113 98 + 1 AAAUAAAGUAGCAAAUUACUAAUUUCGCCUUUGGCCUGUGCAACAUGUUGCUGUCAUUAUGAUUAGCUACAUGUUGCCCAAUUUGCUGGCUGCAACAG ......(((((((((((.........(((...)))..(.(((((((((.((((((.....)).)))).))))))))).))))))))).)))....... ( -30.60) >DroEre_CAF1 9762 98 + 1 AUAAAAAAAGGCAAAUUACUAAUUUCGCCUUUGGCCUAAGCAACAUGUUGCAGUCAUUAUGAUUAGCUACAUGUUGCCCAAUUUGCUGGCCGCAACAG ......((((((((((.....)))).))))))((((...(((((((((.((((((.....)))).)).)))))))))..........))))....... ( -30.92) >DroYak_CAF1 9806 98 + 1 AAAUAAAAUAGCAAAUUACUAAUUUCGCCUUUGGCCUAUGCAACAUGUUGCUGUCAUUAUGAUUAGCUACAUGUUGCCCAAUUUGCUGGCCGCAACAG ........(((((((((.........(((...)))....(((((((((.((((((.....)).)))).)))))))))..))))))))).......... ( -29.50) >DroAna_CAF1 9809 98 + 1 AAAUAAAAUAGCAAAUUACAAAUUUCGCCUUUGGCCUAUGCAACAUGUUGCUGUCAUUAUGAUUAGCAACAUGUUGCCUAAUUUGCUGUCUGUUGAAG .((((..(((((((((((........(((...)))....((((((((((((((((.....)).)))))))))))))).))))))))))).)))).... ( -35.30) >consensus AAAUAAAAUAGCAAAUUACUAAUUUCGCCUUUGGCCUAUGCAACAUGUUGCUGUCAUUAUGAUUAGCUACAUGUUGCCCAAUUUGCUGGCUGCAACAG ........(((((((((.........(((...)))....(((((((((.((((((.....)).)))).)))))))))..))))))))).......... (-28.42 = -28.62 + 0.19)
Location | 16,165,535 – 16,165,633 |
---|---|
Length | 98 |
Sequences | 6 |
Columns | 98 |
Reading direction | reverse |
Mean pairwise identity | 93.61 |
Mean single sequence MFE | -30.22 |
Consensus MFE | -27.04 |
Energy contribution | -27.23 |
Covariance contribution | 0.19 |
Combinations/Pair | 1.04 |
Mean z-score | -3.74 |
Structure conservation index | 0.89 |
SVM decision value | 4.06 |
SVM RNA-class probability | 0.999778 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 16165535 98 - 20766785 CUGUUGCAGCCAGCAAAUUGGGCAACAUGUAGCUAAUCAUAAUGACAGCAACAUGUUGCUUAGGCCAAAGGCGAAAUUAGUAAUUUGCUAUUUUAUUU ...........(((((((((((((((((((.(((..((.....)).))).))))))))))...(((...)))........)))))))))......... ( -28.90) >DroSec_CAF1 9649 98 - 1 CUGUUGCAGCCAGCAAAUUGGGCAACAUGUAGCUAAUCAUAAUGACAGCAACAUGUUGCAUAGGCCAAAGGCGAAAUUAGUAAUUUGCUACUUUAUUU ...........(((((((((.(((((((((.(((..((.....)).))).)))))))))....(((...)))........)))))))))......... ( -28.50) >DroSim_CAF1 10113 98 - 1 CUGUUGCAGCCAGCAAAUUGGGCAACAUGUAGCUAAUCAUAAUGACAGCAACAUGUUGCACAGGCCAAAGGCGAAAUUAGUAAUUUGCUACUUUAUUU ...........(((((((((.(((((((((.(((..((.....)).))).)))))))))....(((...)))........)))))))))......... ( -28.50) >DroEre_CAF1 9762 98 - 1 CUGUUGCGGCCAGCAAAUUGGGCAACAUGUAGCUAAUCAUAAUGACUGCAACAUGUUGCUUAGGCCAAAGGCGAAAUUAGUAAUUUGCCUUUUUUUAU .......((((.......((((((((((((.((...((.....))..)).))))))))))))))))(((((((((........)))))))))...... ( -34.01) >DroYak_CAF1 9806 98 - 1 CUGUUGCGGCCAGCAAAUUGGGCAACAUGUAGCUAAUCAUAAUGACAGCAACAUGUUGCAUAGGCCAAAGGCGAAAUUAGUAAUUUGCUAUUUUAUUU ...........(((((((((.(((((((((.(((..((.....)).))).)))))))))....(((...)))........)))))))))......... ( -28.50) >DroAna_CAF1 9809 98 - 1 CUUCAACAGACAGCAAAUUAGGCAACAUGUUGCUAAUCAUAAUGACAGCAACAUGUUGCAUAGGCCAAAGGCGAAAUUUGUAAUUUGCUAUUUUAUUU ...........(((((((((.(((((((((((((..((.....)).)))))))))))))....(((...)))........)))))))))......... ( -32.90) >consensus CUGUUGCAGCCAGCAAAUUGGGCAACAUGUAGCUAAUCAUAAUGACAGCAACAUGUUGCAUAGGCCAAAGGCGAAAUUAGUAAUUUGCUAUUUUAUUU ...........(((((((((.(((((((((.(((..((.....)).))).)))))))))....(((...)))........)))))))))......... (-27.04 = -27.23 + 0.19)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:33:12 2006