| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 16,165,321 – 16,165,411 |
| Length | 90 |
| Max. P | 0.863596 |
| Location | 16,165,321 – 16,165,411 |
|---|---|
| Length | 90 |
| Sequences | 6 |
| Columns | 94 |
| Reading direction | reverse |
| Mean pairwise identity | 91.75 |
| Mean single sequence MFE | -22.27 |
| Consensus MFE | -19.08 |
| Energy contribution | -19.30 |
| Covariance contribution | 0.22 |
| Combinations/Pair | 1.08 |
| Mean z-score | -1.96 |
| Structure conservation index | 0.86 |
| SVM decision value | 0.84 |
| SVM RNA-class probability | 0.863596 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 16165321 90 - 20766785 ---GUGUGUGUGGCAAAUGAAAUUUAUGCCUAGCAUGAAAAUAGUAAAAGU-UGCUGCAAAAGCCAACCAAAGGUCGAAAUGUCACGCAAAAGU ---...(((((((((..(((..(((((((...)))))))..........((-((((.....)).))))......)))...)))))))))..... ( -21.30) >DroPse_CAF1 10312 92 - 1 CGGCUCUGUGUGGCAGAUGAAAUUUAUGCCUAGCAUGAAAAUAGUAAAAGUUUGCUGCAAAAGCCAGCCAAAGGUCGAAAUGUCACGCA--AGU ..(((.(((((((((..(((..(((((((...)))))))..........(((.(((.....))).)))......)))...)))))))))--))) ( -24.10) >DroSec_CAF1 9437 88 - 1 ---G--UGUGUGGCAAAUGAAAUUUAUGCCUAGCAUGAAAAUAGUAAAAGU-UGCUGCAAAAGCCAGCCAAAGGUCGAAAUGUCACGCAAAAGU ---.--(((((((((..(((..(((((((...)))))))............-.(((((....).))))......)))...)))))))))..... ( -21.50) >DroYak_CAF1 9593 90 - 1 ---AUGUGUGUGGCAAAUGAAAUUUAUGCCUAGCAUGAAAAUAGUAAAAGU-UGCUGCAAAAGCCAGCCAAAGGUCAAAAUGUCACGCAAAAGU ---...(((((((((..(((..(((((((...)))))))............-.(((((....).))))......)))...)))))))))..... ( -22.20) >DroAna_CAF1 9628 89 - 1 ---GUCUGUGUGGCAAAUGAAAUUUGUGCCUAGCCUGAAAAUAGUAAAAGU-UGCAGCUAAAGCCAGCCAAAGGUCGAAAUGUCACGCAA-AGU ---...(((((((((..(((..((((.((..............(((.....-))).((....))..))))))..)))...))))))))).-... ( -20.40) >DroPer_CAF1 10441 92 - 1 CGGCUCUGUGUGGCAGAUGAAAUUUAUGCCUAGCAUGAAAAUAGUAAAAGUUUGCUGCAAAAGCCAGCCAAAGGUCGAAAUGUCACGCA--AGU ..(((.(((((((((..(((..(((((((...)))))))..........(((.(((.....))).)))......)))...)))))))))--))) ( -24.10) >consensus ___GUCUGUGUGGCAAAUGAAAUUUAUGCCUAGCAUGAAAAUAGUAAAAGU_UGCUGCAAAAGCCAGCCAAAGGUCGAAAUGUCACGCAA_AGU ......(((((((((..(((..(((((((...)))))))..............(((((....).))))......)))...)))))))))..... (-19.08 = -19.30 + 0.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:33:10 2006