Locus 4957

Sequence ID 2R_DroMel_CAF1
Location 16,164,535 – 16,164,631
Length 96
Max. P 0.610484
window7940

overview

Window 0

Location 16,164,535 – 16,164,631
Length 96
Sequences 5
Columns 112
Reading direction reverse
Mean pairwise identity 86.62
Mean single sequence MFE -28.68
Consensus MFE -20.02
Energy contribution -20.58
Covariance contribution 0.56
Combinations/Pair 1.11
Mean z-score -1.82
Structure conservation index 0.70
SVM decision value 0.16
SVM RNA-class probability 0.610484
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 16164535 96 - 20766785
AAGCAACAAAUCCGAGAAAUAAAAUUAGUGAGUAUUAUUU-UUAAGAGUGGGCCGACGAC---AAGUCAACGGAAACGUGUGGGUGGCUGACUG------------GCUGUC
.(((......((..((((((((.(((....))).))))))-))..))((.(((((((...---..))).(((....)))......)))).))..------------)))... ( -25.50)
>DroSec_CAF1 8602 107 - 1
AAGCAACAAAUCCGAGAAAUAAAAUUAGUGAGUAUUAUUU-UUAAGAGUGGGCCGACGAC---AAGUCAACGGAAACGUGUGGGUGGCUGGCUGGUUGGC-AGUUGGCUGUC
...((((...((..((((((((.(((....))).))))))-))..))((.(((((((...---..))).(((....)))......)))).))..))))((-((....)))). ( -29.80)
>DroSim_CAF1 9072 107 - 1
AAGCAACAAAUCCGAGAAAUAAAAUUAGUGAGUAUUAUUU-UUAAGAGUGGGCCGACGAC---AAGUCAACGGAAACGUGUGGGUGGCUGGCUGGUUGGC-AGUUGGCUGUC
...((((...((..((((((((.(((....))).))))))-))..))((.(((((((...---..))).(((....)))......)))).))..))))((-((....)))). ( -29.80)
>DroYak_CAF1 8644 109 - 1
AAGCAACAAAUCCGAGAAAUAAAAUUAGUGAGUAUUAUUUUUUAAGAGUGGGCCGACGAC---AAGUAAACGGAAACGUGUGGGUGGCUGGCUGUUUGGCUGGUUGGCUGUC
.((((((....(((((((((((.(((....))).)))))))))((.(((.(((((....(---(.....(((....))).))..))))).))).)).))...))).)))... ( -28.40)
>DroAna_CAF1 8950 96 - 1
CAGCAACAAAUCCGAGAAAUAAAAUUAGUGAGUAUUAUUUUUCGAGAGUGGGCCGACGACAACAAGUCAACGGAAACGUGUGGGUGGU----------------ACGCUGCC
((((......((((((((((((.(((....))).)))))))))).))(((.(((.(((((.....))).(((....))))).)))..)----------------)))))).. ( -29.90)
>consensus
AAGCAACAAAUCCGAGAAAUAAAAUUAGUGAGUAUUAUUU_UUAAGAGUGGGCCGACGAC___AAGUCAACGGAAACGUGUGGGUGGCUGGCUG_UUGGC__GUUGGCUGUC
.(((.........((.((((((.(((....))).)))))).))...(((.(((((((........))).(((....)))......)))).))).............)))... (-20.02 = -20.58 +   0.56)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:33:09 2006