Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 16,157,959 – 16,158,079 |
Length | 120 |
Max. P | 0.840271 |
Location | 16,157,959 – 16,158,079 |
---|---|
Length | 120 |
Sequences | 6 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 74.33 |
Mean single sequence MFE | -47.75 |
Consensus MFE | -20.44 |
Energy contribution | -19.67 |
Covariance contribution | -0.78 |
Combinations/Pair | 1.37 |
Mean z-score | -2.12 |
Structure conservation index | 0.43 |
SVM decision value | 0.75 |
SVM RNA-class probability | 0.840271 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 16157959 120 + 20766785 UGCUGUAUGGCUGUCUCGUUGUUGGCAUCGCAGGCCAGGCCAUACACGGUAUCGGUGGGCAGGGCAAUCACUUGGCCACCAAGCAGGCACUGGCGGGCCAACUGGAGAGCAGCCUCGUCG ........(((((((((...((((((.(((((((((..(((......)))...(((((.((((.......)))).))))).....))).)).))))))))))..)))).)))))...... ( -56.00) >DroVir_CAF1 2123 120 + 1 CGCUGUAUGGCCUCCUCGUUGUUGGCAUCGCAUGCCAAACCAUACACUGUAUCUGUGGGCAAGCCUAUCACCUGGCCAAGAUGCAGGCACUGCUCGGCCAGUUUCAAGGCAUCCAGCGAU (((((....(((.........(((((((...)))))))......(((.......))))))..((((.....((((((..((.((((...)))))))))))).....))))...))))).. ( -43.30) >DroPse_CAF1 2066 120 + 1 CGUUGGAUGGCAUGCUCGUUGUUGGCAUCGCAUGCCAGCCCAUAGACGGUGUCUGUGGGCAGUGCUAUCACCUGACCGCCCAACAGGCAUUGACGUGCCACCUUCAGAGCGGCUCUAUCC ....((((((..(((((...(.(((((.((((((((.((((((((((...)))))))))).(.((..((....))..)).)....)))).)).))))))).)....)))))...)))))) ( -51.10) >DroGri_CAF1 2384 120 + 1 CGCUGUAUGGCCUCCUCAUUGUUGGCAUCGCAGGCCAAGCCAUAAACCGUAUCUGUGGGCAGGGCAAUCACCUUCCCCAGCUGCAGGCAUUGCUCAGCCAGCUUCAGAGCGUUCAGCGCA (((((.(((..(((......((((((...(((((((..(........)(((.(((.(((.(((.......))).)))))).))).))).))))...))))))....)))))).))))).. ( -41.80) >DroWil_CAF1 2729 120 + 1 CGCUGAAUGGCUUGCUCGUUGUUGGCAUCGCAAGCCAAGCCGUAGACCGUAUCUGUGGGCAGAGCAAUGAUUUGACCUGCUAGCAGACACUGACGGGCAAGAUCUAAAGCUCGUUCUUCA .(((......((((((((((.(((((.......)))))..........((.(((((.(((((..(((....)))..))))).))))).)).))))))))))......))).......... ( -43.20) >DroPer_CAF1 2283 120 + 1 CGUUGGAUGGCAUGCUCGUUGUUGGCAUCGCAUGCCAGCCCAUAGACGGUGUCUGUGGGCAGUGCUAUCACCUGACCGCCCAACAGGCAUUGACGUGCCACCUUCAGAGCGGCUCUAUCC ....((((((..(((((...(.(((((.((((((((.((((((((((...)))))))))).(.((..((....))..)).)....)))).)).))))))).)....)))))...)))))) ( -51.10) >consensus CGCUGUAUGGCAUGCUCGUUGUUGGCAUCGCAUGCCAAGCCAUAGACGGUAUCUGUGGGCAGGGCAAUCACCUGACCACCCAGCAGGCACUGACGGGCCAGCUUCAGAGCGGCCACAUCA .(((...(((((.........(((((.......)))))........(.((.(((((((.((((.......)))).)).....))))).)).)...))))).......))).......... (-20.44 = -19.67 + -0.78)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:33:05 2006