Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 16,157,427 – 16,157,519 |
Length | 92 |
Max. P | 0.525487 |
Location | 16,157,427 – 16,157,519 |
---|---|
Length | 92 |
Sequences | 6 |
Columns | 101 |
Reading direction | reverse |
Mean pairwise identity | 76.88 |
Mean single sequence MFE | -31.93 |
Consensus MFE | -17.83 |
Energy contribution | -19.28 |
Covariance contribution | 1.45 |
Combinations/Pair | 1.32 |
Mean z-score | -1.56 |
Structure conservation index | 0.56 |
SVM decision value | -0.02 |
SVM RNA-class probability | 0.525487 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 16157427 92 - 20766785 UAGUGCGCGCCGGCGUGGCUCUCAAGCCGACACUCAGCCUCAUGGAGGAGUUCGGCAUUCGGGAGCUAAAAAUGAUGUAGUA--UAAGAGCUA--U----- ....((((....))))((((((((((((((.((((..((....))..))))))))).)).))))))).........(((((.--.....))))--)----- ( -34.00) >DroSec_CAF1 1424 97 - 1 UAGUGCGCGCCGGCGUGGCUCUGAAGCCGACACUCAGCCUCAUGGACGAGUUCGGCAUUCGUCCGCGAAAAAUGCUGUAGUA--UAAGAGCUA--UUGACA ..((((((....))))((((((...(((((.((((..((....))..))))))))).((((....))))..((((....)))--).)))))).--...)). ( -33.30) >DroSim_CAF1 2027 97 - 1 UUGUGCGCGCCGGCGUGGCUCUGAAGCCGACACUCAGCCUCAUGGAUGAGUUCGGCAUUCGGCCGCGAAAAAUGCUUUAGUA--UAAGAGCUA--UCGACA ........(.((((((((((..((((((((.(((((.((....)).)))))))))).))))))))))......(((((....--..)))))..--))).). ( -35.60) >DroEre_CAF1 1435 92 - 1 UUGUGCGGGCCGGAGUCGCUCUAAAGCCCACGCUCAGCCUAAUGGAGGAGUUCGGCAUCCGGGCGCGAAAGAUACUUUAGU-------AGCUA--UCCAAA ((((((...(((((((((((....)))....((((..((....))..))))..))).)))))))))))..((((((.....-------)).))--)).... ( -28.20) >DroYak_CAF1 1423 99 - 1 UUGUGCGAGCCGGAGUCGCUCUAAAGCCGACGCUCAGCCUGAUGGAGGAGUUCGGCAUCCGGGAGCGGAAAAUACUUUAGUAUAUAGGAGCUA--UCCAAA ...........(((...(((((...(((((.((((..((....))..))))))))).((((....))))..((((....))))...)))))..--)))... ( -36.10) >DroAna_CAF1 1565 99 - 1 UAGUGAGAGCGGGAGUGGCUCUAAAGCCAACUCUAAUGCUAAUGGAGGAAUAUGGCAUUCAGACUCGGGAAAUUCUAUAAAU--UAAGCCUUACUUUCAAA .((((((.((.(((((((((....)))).)))))(((((((((......)).))))))).......................--...))))))))...... ( -24.40) >consensus UAGUGCGCGCCGGAGUGGCUCUAAAGCCGACACUCAGCCUCAUGGAGGAGUUCGGCAUUCGGGCGCGAAAAAUGCUUUAGUA__UAAGAGCUA__UCCAAA ...............(((((((...(((((.((((..((....))..))))))))).((((....)))).................)))))))........ (-17.83 = -19.28 + 1.45)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:33:04 2006