Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 16,155,460 – 16,155,576 |
Length | 116 |
Max. P | 0.500000 |
Location | 16,155,460 – 16,155,576 |
---|---|
Length | 116 |
Sequences | 6 |
Columns | 119 |
Reading direction | reverse |
Mean pairwise identity | 76.17 |
Mean single sequence MFE | -29.61 |
Consensus MFE | -15.83 |
Energy contribution | -15.42 |
Covariance contribution | -0.41 |
Combinations/Pair | 1.33 |
Mean z-score | -1.59 |
Structure conservation index | 0.53 |
SVM decision value | -0.07 |
SVM RNA-class probability | 0.500000 |
Prediction | OTHER |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 16155460 116 - 20766785 GUGGCAUCGCUGGCAAAGUUUAAGAAGCUGCCUAACACUAA---CAGCUUUACAGAAGUUUUUUCCCCGAACGACGCCAACUGUUAGCGGGAAAUAUUCCUUCAUCCUGCAGAUGCCAA .(((((((((.((..........(((((((...........---)))))))...((((...(((((((.((((........)))).).)))))).....))))..)).)).))))))). ( -35.20) >DroSec_CAF1 44424 115 - 1 GUGGCAUCGCUGGCAAAGCUUUACAAGCUUCCUAACACUAA---CAGCUUAGCAGAAUUU-UUUCCCUGAACGACGCCAACUGUUAGCGGGAAAUAUUCCUUCACCCUGCAGAUGCUAC ((((((((((.((....(((....(((((............---.)))))))).((((..-((((((..((((........))))...)))))).))))......)).)).)))))))) ( -30.92) >DroSim_CAF1 44627 116 - 1 GUGGCAUCGCUGGCAAAGCUUUACAAGCUUCCUAACACUAA---CAGCUUAGCAGAAUUUUUUUCCCUGAACGACGCCCACUGUUAGCGGGAAAUAUUCCUUCAUCCUGCAAAUGCUAA .((((((.((.((....(((....(((((............---.)))))))).((((...((((((..((((........))))...)))))).))))......)).))..)))))). ( -24.92) >DroEre_CAF1 46190 116 - 1 GUGGCAGCGCUGGCAAAGCUAUCGAAGCUUUCUAACACUAC---GAACUUGGGCGAAUUUUUUUCCCCUAACGACGCCAACUGUUAGCGGGAAAUAUUCCUUCAUCCUGCCGAUGCCAA .(((((....((((((((((.....))))))..........---.....((((.((((...((((((((((((........)))))).)))))).)))).))))....)))).))))). ( -35.30) >DroYak_CAF1 45469 116 - 1 GUGGCAACGCUGAUAAAGCCAACAAAGCUGUCUAACACUAG---CAGCUUGUGCAAAGUUUUUUCCAUUAACGACGCCAAUUGUUAGCGGGAAAUAUUCUUUUAUCCUGCCGAUGUCAA .(((((.(((.((((((((..((((.((((.(((....)))---))))))))))..(((.((((((.(((((((......))))))).)))))).)))..))))))..).)).))))). ( -31.40) >DroAna_CAF1 45624 97 - 1 GUGGCAGCACUACAAAAGCUUAAUAAGCUUUCUAACACUAAUUGCAGCCAAAGGAAAUAU-CU--------CGACGCCGGAUGUUAGCGGGAA----UCCUUCG---------UGUCAA .((((.(((.....((((((.....))))))...........))).))))..........-..--------.(((((.((((..........)----)))...)---------)))).. ( -19.89) >consensus GUGGCAUCGCUGGCAAAGCUUAACAAGCUUCCUAACACUAA___CAGCUUAGCAGAAUUUUUUUCCCUGAACGACGCCAACUGUUAGCGGGAAAUAUUCCUUCAUCCUGCAGAUGCCAA .(((((.((((((((.((((.....))))...........................................(....)...))))))))(((.....))).............))))). (-15.83 = -15.42 + -0.41)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:33:03 2006