Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 16,146,512 – 16,146,615 |
Length | 103 |
Max. P | 0.998676 |
Location | 16,146,512 – 16,146,615 |
---|---|
Length | 103 |
Sequences | 5 |
Columns | 103 |
Reading direction | forward |
Mean pairwise identity | 96.29 |
Mean single sequence MFE | -28.57 |
Consensus MFE | -25.48 |
Energy contribution | -25.60 |
Covariance contribution | 0.12 |
Combinations/Pair | 1.12 |
Mean z-score | -2.41 |
Structure conservation index | 0.89 |
SVM decision value | 3.18 |
SVM RNA-class probability | 0.998676 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 16146512 103 + 20766785 UCAUUAAGAAAACCGAUUCCGUGGGCACUUGUAGUGAAAAAAAACCAGACCAAUUAUCCCAUUGCCUGGCCCACGAAAUCGUGUUGUGGAGUGUAAACAAUUG .((((.....((((((((.(((((((.(..((((((.......................))))))..)))))))).))))).)))....)))).......... ( -28.40) >DroSec_CAF1 35485 102 + 1 UCAUUAAGAAAGCCGAUUUCGUGGGCACUUGUAAUGAAA-AAAACCAGACCAAUUAUCCCAUUGCCUGGCCCACGAAAUCGUGUUGUGGAGUGUAAACAAUUG .((((.....((((((((((((((((.(..((((((...-...................))))))..)))))))))))))).)))....)))).......... ( -32.85) >DroSim_CAF1 35685 102 + 1 UCAUUAAGAAAGCCGAUUCCGUGGGCACUUGUAAUGAAA-AAAACCAGACCAAUUAUCCCAUUGCCUGGCCCACGAAAUCGUGUUGUGGAGUGUAAACAAUUG .((((.....((((((((.(((((((.(..((((((...-...................))))))..)))))))).))))).)))....)))).......... ( -28.45) >DroEre_CAF1 36436 102 + 1 UCAUUAAGAAAGCCGAUUCAGUGGGCACUUGUAAUGAAA-AAAACCAGACCAAUUAUUCCAUUGCCUGGCCCACGAAAUCGUGUUGUUGAGUGUAAACAAUUG .((((.....((((((((..((((((.(..((((((...-...................))))))..)))))))..))))).)))....)))).......... ( -26.55) >DroYak_CAF1 36414 102 + 1 UCAUUAAGAAAGCCGAUUCAGUGGGUACUUGUAAUGAAA-AAAACCAGACCAAUUAUCCCAUUGGCUGGCCCACGAAAUCGUGUUGUGGAGUGUAAACAAUUG .((((.....((((((((..(((((.........(....-)...((((.(((((......))))))))))))))..))))).)))....)))).......... ( -26.60) >consensus UCAUUAAGAAAGCCGAUUCCGUGGGCACUUGUAAUGAAA_AAAACCAGACCAAUUAUCCCAUUGCCUGGCCCACGAAAUCGUGUUGUGGAGUGUAAACAAUUG .((((.....((((((((.(((((((....((((((.......................))))))...))))))).))))).)))....)))).......... (-25.48 = -25.60 + 0.12)
Location | 16,146,512 – 16,146,615 |
---|---|
Length | 103 |
Sequences | 5 |
Columns | 103 |
Reading direction | reverse |
Mean pairwise identity | 96.29 |
Mean single sequence MFE | -27.78 |
Consensus MFE | -25.38 |
Energy contribution | -25.86 |
Covariance contribution | 0.48 |
Combinations/Pair | 1.08 |
Mean z-score | -2.06 |
Structure conservation index | 0.91 |
SVM decision value | 2.81 |
SVM RNA-class probability | 0.997174 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 16146512 103 - 20766785 CAAUUGUUUACACUCCACAACACGAUUUCGUGGGCCAGGCAAUGGGAUAAUUGGUCUGGUUUUUUUUCACUACAAGUGCCCACGGAAUCGGUUUUCUUAAUGA ..................(((.(((((((((((((((((((((......))).))))))........(((.....)))))))))))))))))).......... ( -30.90) >DroSec_CAF1 35485 102 - 1 CAAUUGUUUACACUCCACAACACGAUUUCGUGGGCCAGGCAAUGGGAUAAUUGGUCUGGUUUU-UUUCAUUACAAGUGCCCACGAAAUCGGCUUUCUUAAUGA ......................((((((((((((((..(.((((..(.((((.....))))..-)..)))).)..).)))))))))))))............. ( -29.50) >DroSim_CAF1 35685 102 - 1 CAAUUGUUUACACUCCACAACACGAUUUCGUGGGCCAGGCAAUGGGAUAAUUGGUCUGGUUUU-UUUCAUUACAAGUGCCCACGGAAUCGGCUUUCUUAAUGA ......................((((((((((((((..(.((((..(.((((.....))))..-)..)))).)..).)))))))))))))............. ( -29.00) >DroEre_CAF1 36436 102 - 1 CAAUUGUUUACACUCAACAACACGAUUUCGUGGGCCAGGCAAUGGAAUAAUUGGUCUGGUUUU-UUUCAUUACAAGUGCCCACUGAAUCGGCUUUCUUAAUGA ...(((((.......)))))..((((((.(((((((..(.(((((((.((((.....))))..-))))))).)..).)))))).))))))............. ( -24.80) >DroYak_CAF1 36414 102 - 1 CAAUUGUUUACACUCCACAACACGAUUUCGUGGGCCAGCCAAUGGGAUAAUUGGUCUGGUUUU-UUUCAUUACAAGUACCCACUGAAUCGGCUUUCUUAAUGA ......................((((((.((((((((((((((......))))).))))....-......((....))))))).))))))............. ( -24.70) >consensus CAAUUGUUUACACUCCACAACACGAUUUCGUGGGCCAGGCAAUGGGAUAAUUGGUCUGGUUUU_UUUCAUUACAAGUGCCCACGGAAUCGGCUUUCUUAAUGA ......................(((((((((((((((((((((......))).))))))........(((.....)))))))))))))))............. (-25.38 = -25.86 + 0.48)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:33:01 2006