| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 16,133,027 – 16,133,125 |
| Length | 98 |
| Max. P | 0.982304 |
| Location | 16,133,027 – 16,133,125 |
|---|---|
| Length | 98 |
| Sequences | 5 |
| Columns | 98 |
| Reading direction | forward |
| Mean pairwise identity | 96.73 |
| Mean single sequence MFE | -32.14 |
| Consensus MFE | -31.38 |
| Energy contribution | -31.02 |
| Covariance contribution | -0.36 |
| Combinations/Pair | 1.11 |
| Mean z-score | -1.55 |
| Structure conservation index | 0.98 |
| SVM decision value | 1.91 |
| SVM RNA-class probability | 0.982304 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 16133027 98 + 20766785 CCGUUUCUUUUCCGUUCGGCUCGAGCGCGAUCACGAUCGAUUUGAGACUAGUUGCUUUGCUAUUCGCGGAAUGGAAUCCGCUCUGAGUCGAGCUUUGU .............(((((((((((((((((((.(((.....))).)).((((......)))).))))(((......))))))).)))))))))..... ( -32.30) >DroSec_CAF1 22083 98 + 1 CCGUUUCUUUUCCGUUCGGUUCGAGCGCGAUCACGAUCGAUUUGAGACUAGCCGCUUUGCUAUUCGCGGAAUGGAAUCCGCUCUGAGUCGAGCUUUGU .............(((((..((((((((((((.(((.....))).)).((((......)))).))))(((......))))))).))..)))))..... ( -29.20) >DroSim_CAF1 22239 98 + 1 CCGUUUCUUUUCCGUUCGGUUCGAGCGCGAUCACGAUCGAUUUGAGACUAGUCGCUUUGCUAUUCGCGGAAUGGAAUCCGCUCUGAGUCGAGCUUUGU .............(((((..((((((((((...(((.(((((.......)))))..)))....))))(((......))))))).))..)))))..... ( -30.20) >DroEre_CAF1 22686 98 + 1 CCGUUCCUUUUCCGUUCGGUUCGAGCGCGAUCACGAUCGAUUUGAGACUAGUCGCUUUGCUAUUCGCGGAAUGGAAUCCGCUCUGAGCCGAGCUUUAC .............(((((((((((((((((...(((.(((((.......)))))..)))....))))(((......))))))).)))))))))..... ( -34.50) >DroYak_CAF1 22522 98 + 1 CCGUUUCUUUUCCGUUCGGUUCGAGCGCGAUCACGAUCGAUUUGAGACUAGUCGCUUUGCUAUUCGCGGAAUGGAAUCCGCUCUGAGCCGAGCUUUGC .............(((((((((((((((((...(((.(((((.......)))))..)))....))))(((......))))))).)))))))))..... ( -34.50) >consensus CCGUUUCUUUUCCGUUCGGUUCGAGCGCGAUCACGAUCGAUUUGAGACUAGUCGCUUUGCUAUUCGCGGAAUGGAAUCCGCUCUGAGUCGAGCUUUGU .............(((((((((((((((((...(((.(((((.......)))))..)))....))))(((......))))))).)))))))))..... (-31.38 = -31.02 + -0.36)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:32:59 2006