Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 2,718,055 – 2,718,232 |
Length | 177 |
Max. P | 0.974451 |
Location | 2,718,055 – 2,718,156 |
---|---|
Length | 101 |
Sequences | 5 |
Columns | 111 |
Reading direction | reverse |
Mean pairwise identity | 88.00 |
Mean single sequence MFE | -28.71 |
Consensus MFE | -23.48 |
Energy contribution | -23.72 |
Covariance contribution | 0.24 |
Combinations/Pair | 1.11 |
Mean z-score | -2.05 |
Structure conservation index | 0.82 |
SVM decision value | 1.39 |
SVM RNA-class probability | 0.949342 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 2718055 101 - 20766785 UUUCUCAAGUCAUUUGUGUGAUUUGGGUUAAUGUCGGAAGAGCGGUGGAAG-----AAUAAUCGCUC-----AGAUAUAUACCUGCUAAUACCUAUGUAUCCGCAGCGAAA ...((((((((((....))))))))))...(((((....(((((((.....-----....)))))))-----.)))))...(((((..((((....))))..)))).)... ( -29.70) >DroSec_CAF1 9619 99 - 1 UUUCUCAAGUCAUUUGUGUGAUUUGGGUUAAUGUCGGAAGAGCGGUGGAAG-----AAUAAUCGCUC-----AGAU--AUACCUGCUAAUACCUAUGUAUCCGCAGCGAAA ...((((((((((....))))))))))...(((((....(((((((.....-----....)))))))-----.)))--)).(((((..((((....))))..)))).)... ( -29.70) >DroEre_CAF1 1245 99 - 1 U-UCUCAAGUCAUUUGUGUGAUUUGGGUUAAUGUCGGAAGAGCGGUGGAAG-----AAUAAUCGUUC-----GGAUAUAUACCUGCU-AUACUCAUGUAUCCGCAGCGAAA .-.((((((((((....))))))))))......((....))..........-----.....((((((-----((((((((.......-......))))))))).))))).. ( -27.52) >DroYak_CAF1 9900 101 - 1 UUUCUGAAGUCAUUUGUGUGAUUUGGGUUAAUGUCGGAAGAGCGGUGGAAG-----AAUAAUCGCUC-----AGAUAUAUACCUGCUAAUACUUAUGUGUCUGCAGCGAAA ...((.(((((((....))))))).))...(((((....(((((((.....-----....)))))))-----.)))))...(((((..((((....))))..)))).)... ( -28.60) >DroAna_CAF1 9312 111 - 1 UUUCUCAAGUCAUUUGUGUGAUUUGGGUUUAUGUCGGAAGAGCGGCAGCAGCCGAAAAUAAUCGUAUAUGGUAUAUAUAAACCUGCUAAUACAUAUGUAUCCACAGCGAAA ...((((((((((....))))))))))......((....)).((((....)))).......((((...(((.(((((((..............))))))))))..)))).. ( -28.04) >consensus UUUCUCAAGUCAUUUGUGUGAUUUGGGUUAAUGUCGGAAGAGCGGUGGAAG_____AAUAAUCGCUC_____AGAUAUAUACCUGCUAAUACCUAUGUAUCCGCAGCGAAA ...((((((((((....))))))))))......(((...(((((((..............)))))))...............((((..((((....))))..))))))).. (-23.48 = -23.72 + 0.24)
Location | 2,718,086 – 2,718,196 |
---|---|
Length | 110 |
Sequences | 6 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 78.83 |
Mean single sequence MFE | -23.24 |
Consensus MFE | -17.97 |
Energy contribution | -18.47 |
Covariance contribution | 0.50 |
Combinations/Pair | 1.00 |
Mean z-score | -2.85 |
Structure conservation index | 0.77 |
SVM decision value | 1.73 |
SVM RNA-class probability | 0.974451 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 2718086 110 + 20766785 AUAUAUCU-----GAGCGAUUAUU-----CUUCCACCGCUCUUCCGACAUUAACCCAAAUCACACAAAUGACUUGAGAAAACCGCACACAAAGUGCCAAAGUGAUUUGGGGCCAACCUUU ........-----(((((......-----.......)))))............((((((((((.(((.....)))........((((.....))))....)))))))))).......... ( -27.82) >DroPse_CAF1 9326 86 + 1 ----------------------------------ACAGAAAUGUCGACAUUAACCCAAAUCACACAAAUGACUUGAGAAAACCGCACACAAAGUGCCAAAGUGAUUUGAGGCUAACCUUU ----------------------------------(((....))).....(((.((((((((((.(((.....)))........((((.....))))....)))))))).)).)))..... ( -18.80) >DroSec_CAF1 9650 108 + 1 AU--AUCU-----GAGCGAUUAUU-----CUUCCACCGCUCUUCCGACAUUAACCCAAAUCACACAAAUGACUUGAGAAAACCGCACACAAAGUGCCAAAGUGAUUUGGGGCCAACCUUU ..--....-----(((((......-----.......)))))............((((((((((.(((.....)))........((((.....))))....)))))))))).......... ( -27.82) >DroEre_CAF1 1275 109 + 1 AUAUAUCC-----GAACGAUUAUU-----CUUCCACCGCUCUUCCGACAUUAACCCAAAUCACACAAAUGACUUGAGA-AACCGCACACAAAGUGCCAAAGUGAUUUGGAGCCAACCUUU ........-----(((.((....)-----)))).....................(((((((((.(((.....)))...-....((((.....))))....)))))))))........... ( -18.50) >DroAna_CAF1 9343 120 + 1 UUAUAUAUACCAUAUACGAUUAUUUUCGGCUGCUGCCGCUCUUCCGACAUAAACCCAAAUCACACAAAUGACUUGAGAAAACCGCACACAAAGUGCCAAAGUGAUUUGGGGCUAACCUUU ..........................((((....))))...........((..((((((((((.(((.....)))........((((.....))))....))))))))))..))...... ( -27.70) >DroPer_CAF1 9449 86 + 1 ----------------------------------ACAGAAAUGUCGACAUUAACCCAAAUCACACAAAUGACUUGAGAAAACCGCACACAAAGUGCCAAAGUGAUUUGAGGCUAACCUUU ----------------------------------(((....))).....(((.((((((((((.(((.....)))........((((.....))))....)))))))).)).)))..... ( -18.80) >consensus AU__AUCU_____GA_CGAUUAUU_____CUUCCACCGCUCUUCCGACAUUAACCCAAAUCACACAAAUGACUUGAGAAAACCGCACACAAAGUGCCAAAGUGAUUUGGGGCCAACCUUU .....................................................((((((((((.(((.....)))........((((.....))))....)))))))))).......... (-17.97 = -18.47 + 0.50)
Location | 2,718,086 – 2,718,196 |
---|---|
Length | 110 |
Sequences | 6 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 78.83 |
Mean single sequence MFE | -29.70 |
Consensus MFE | -22.52 |
Energy contribution | -22.47 |
Covariance contribution | -0.06 |
Combinations/Pair | 1.09 |
Mean z-score | -1.98 |
Structure conservation index | 0.76 |
SVM decision value | 1.30 |
SVM RNA-class probability | 0.939410 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 2718086 110 - 20766785 AAAGGUUGGCCCCAAAUCACUUUGGCACUUUGUGUGCGGUUUUCUCAAGUCAUUUGUGUGAUUUGGGUUAAUGUCGGAAGAGCGGUGGAAG-----AAUAAUCGCUC-----AGAUAUAU ....((((((((.(((((((....((((.....))))(..((....))..)......)))))))))))))))(((....(((((((.....-----....)))))))-----.))).... ( -33.50) >DroPse_CAF1 9326 86 - 1 AAAGGUUAGCCUCAAAUCACUUUGGCACUUUGUGUGCGGUUUUCUCAAGUCAUUUGUGUGAUUUGGGUUAAUGUCGACAUUUCUGU---------------------------------- ....(((((((.((((((((....((((.....))))(..((....))..)......)))))))))))))))..............---------------------------------- ( -23.70) >DroSec_CAF1 9650 108 - 1 AAAGGUUGGCCCCAAAUCACUUUGGCACUUUGUGUGCGGUUUUCUCAAGUCAUUUGUGUGAUUUGGGUUAAUGUCGGAAGAGCGGUGGAAG-----AAUAAUCGCUC-----AGAU--AU ....((((((((.(((((((....((((.....))))(..((....))..)......)))))))))))))))(((....(((((((.....-----....)))))))-----.)))--.. ( -33.50) >DroEre_CAF1 1275 109 - 1 AAAGGUUGGCUCCAAAUCACUUUGGCACUUUGUGUGCGGUU-UCUCAAGUCAUUUGUGUGAUUUGGGUUAAUGUCGGAAGAGCGGUGGAAG-----AAUAAUCGUUC-----GGAUAUAU ....((((((.(((((((((....((((.....))))(..(-.....)..)......)))))))))))))))(((....(((((((.....-----....)))))))-----.))).... ( -30.40) >DroAna_CAF1 9343 120 - 1 AAAGGUUAGCCCCAAAUCACUUUGGCACUUUGUGUGCGGUUUUCUCAAGUCAUUUGUGUGAUUUGGGUUUAUGUCGGAAGAGCGGCAGCAGCCGAAAAUAAUCGUAUAUGGUAUAUAUAA ...(((((((((((((((((....((((.....))))(..((....))..)......))))))))))......((....))))(((....))).....)))))((((((...)))))).. ( -33.40) >DroPer_CAF1 9449 86 - 1 AAAGGUUAGCCUCAAAUCACUUUGGCACUUUGUGUGCGGUUUUCUCAAGUCAUUUGUGUGAUUUGGGUUAAUGUCGACAUUUCUGU---------------------------------- ....(((((((.((((((((....((((.....))))(..((....))..)......)))))))))))))))..............---------------------------------- ( -23.70) >consensus AAAGGUUAGCCCCAAAUCACUUUGGCACUUUGUGUGCGGUUUUCUCAAGUCAUUUGUGUGAUUUGGGUUAAUGUCGGAAGAGCGGUGGAAG_____AAUAAUCG_UC_____AGAU__AU ....(((((((.((((((((....((((.....))))(..((....))..)......)))))))))))))))................................................ (-22.52 = -22.47 + -0.06)
Location | 2,718,116 – 2,718,232 |
---|---|
Length | 116 |
Sequences | 6 |
Columns | 118 |
Reading direction | forward |
Mean pairwise identity | 79.61 |
Mean single sequence MFE | -28.58 |
Consensus MFE | -17.10 |
Energy contribution | -17.77 |
Covariance contribution | 0.67 |
Combinations/Pair | 1.00 |
Mean z-score | -2.30 |
Structure conservation index | 0.60 |
SVM decision value | 1.00 |
SVM RNA-class probability | 0.898535 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 2718116 116 + 20766785 CUUCCGACAUUAACCCAAAUCACACAAAUGACUUGAGAAAACCGCACACAAAGUGCCAAAGUGAUUUGGGGCCAACCUUUU-GGG-CAUUGCGCUCGGAGAUUGGGGGCCGCAGAUCC ..(((........((((((((((.(((.....)))........((((.....))))....)))))))))).((((..((((-(((-(.....)))))))).))))))).......... ( -35.00) >DroPse_CAF1 9332 91 + 1 AUGUCGACAUUAACCCAAAUCACACAAAUGACUUGAGAAAACCGCACACAAAGUGCCAAAGUGAUUUGAGGCUAACCUUUU-AAGCCAUUGU-------------------------- ...............((((((((.(((.....)))........((((.....))))....)))))))).((((........-.)))).....-------------------------- ( -19.40) >DroEre_CAF1 1305 115 + 1 CUUCCGACAUUAACCCAAAUCACACAAAUGACUUGAGA-AACCGCACACAAAGUGCCAAAGUGAUUUGGAGCCAACCUUUU-GGG-CAUUGUGCCGGGAGAUUGGGGGCCGCAGAUCC ..(((.........(((((((((.(((.....)))...-....((((.....))))....)))))))))..((((.(((((-((.-.......))))))).))))))).......... ( -31.60) >DroYak_CAF1 9961 116 + 1 CUUCCGACAUUAACCCAAAUCACACAAAUGACUUCAGAAAACCGCACACAAAGUGCCAAAGUGAUUUGGGGCCAACCUUUU-GGG-CAUUGUGCCCGUAGAUUGGGGGUCGCAGAUCC ....((((.....((((((((((.....((....)).......((((.....))))....)))))))))).((((.((..(-(((-(.....))))).)).))))..))))....... ( -39.80) >DroAna_CAF1 9383 94 + 1 CUUCCGACAUAAACCCAAAUCACACAAAUGACUUGAGAAAACCGCACACAAAGUGCCAAAGUGAUUUGGGGCUAACCUUUUUGGC-CAUUGUUCC----------------------- .....((((.....(((((((((.(((.....)))........((((.....))))....)))))))))((((((.....)))))-)..))))..----------------------- ( -26.30) >DroPer_CAF1 9455 91 + 1 AUGUCGACAUUAACCCAAAUCACACAAAUGACUUGAGAAAACCGCACACAAAGUGCCAAAGUGAUUUGAGGCUAACCUUUU-AAGCCAUUGU-------------------------- ...............((((((((.(((.....)))........((((.....))))....)))))))).((((........-.)))).....-------------------------- ( -19.40) >consensus CUUCCGACAUUAACCCAAAUCACACAAAUGACUUGAGAAAACCGCACACAAAGUGCCAAAGUGAUUUGGGGCCAACCUUUU_GGG_CAUUGUGCC_______________________ .............((((((((((.(((.....)))........((((.....))))....))))))))))................................................ (-17.10 = -17.77 + 0.67)
Location | 2,718,116 – 2,718,232 |
---|---|
Length | 116 |
Sequences | 6 |
Columns | 118 |
Reading direction | reverse |
Mean pairwise identity | 79.61 |
Mean single sequence MFE | -30.54 |
Consensus MFE | -22.64 |
Energy contribution | -21.92 |
Covariance contribution | -0.72 |
Combinations/Pair | 1.16 |
Mean z-score | -1.22 |
Structure conservation index | 0.74 |
SVM decision value | 0.27 |
SVM RNA-class probability | 0.662316 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 2718116 116 - 20766785 GGAUCUGCGGCCCCCAAUCUCCGAGCGCAAUG-CCC-AAAAGGUUGGCCCCAAAUCACUUUGGCACUUUGUGUGCGGUUUUCUCAAGUCAUUUGUGUGAUUUGGGUUAAUGUCGGAAG .(((.((.(....))))))((((((((((.((-((.-.((((.(((....)))....)))))))).....))))).(((..((((((((((....))))))))))..))).))))).. ( -34.70) >DroPse_CAF1 9332 91 - 1 --------------------------ACAAUGGCUU-AAAAGGUUAGCCUCAAAUCACUUUGGCACUUUGUGUGCGGUUUUCUCAAGUCAUUUGUGUGAUUUGGGUUAAUGUCGACAU --------------------------....((((..-.....(((((((.((((((((....((((.....))))(..((....))..)......))))))))))))))))))).... ( -24.01) >DroEre_CAF1 1305 115 - 1 GGAUCUGCGGCCCCCAAUCUCCCGGCACAAUG-CCC-AAAAGGUUGGCUCCAAAUCACUUUGGCACUUUGUGUGCGGUU-UCUCAAGUCAUUUGUGUGAUUUGGGUUAAUGUCGGAAG ...(((((((((.(((((((...(((.....)-)).-...)))))))...............((((.....))))))))-.((((((((((....)))))))))).....).)))).. ( -33.60) >DroYak_CAF1 9961 116 - 1 GGAUCUGCGACCCCCAAUCUACGGGCACAAUG-CCC-AAAAGGUUGGCCCCAAAUCACUUUGGCACUUUGUGUGCGGUUUUCUGAAGUCAUUUGUGUGAUUUGGGUUAAUGUCGGAAG .......((((..(((((((..((((.....)-)))-...))))))).((((((((((....((((.....))))(..((....))..)......)))))))))).....)))).... ( -41.40) >DroAna_CAF1 9383 94 - 1 -----------------------GGAACAAUG-GCCAAAAAGGUUAGCCCCAAAUCACUUUGGCACUUUGUGUGCGGUUUUCUCAAGUCAUUUGUGUGAUUUGGGUUUAUGUCGGAAG -----------------------.((.((.((-(((.....)))))..((((((((((....((((.....))))(..((....))..)......))))))))))....))))..... ( -25.50) >DroPer_CAF1 9455 91 - 1 --------------------------ACAAUGGCUU-AAAAGGUUAGCCUCAAAUCACUUUGGCACUUUGUGUGCGGUUUUCUCAAGUCAUUUGUGUGAUUUGGGUUAAUGUCGACAU --------------------------....((((..-.....(((((((.((((((((....((((.....))))(..((....))..)......))))))))))))))))))).... ( -24.01) >consensus _______________________GGCACAAUG_CCC_AAAAGGUUAGCCCCAAAUCACUUUGGCACUUUGUGUGCGGUUUUCUCAAGUCAUUUGUGUGAUUUGGGUUAAUGUCGGAAG ..................................((....(.(((((((.((((((((....((((.....))))(..((....))..)......))))))))))))))).).))... (-22.64 = -21.92 + -0.72)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:40:10 2006