Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 16,131,682 – 16,131,784 |
Length | 102 |
Max. P | 0.763416 |
Location | 16,131,682 – 16,131,784 |
---|---|
Length | 102 |
Sequences | 6 |
Columns | 116 |
Reading direction | reverse |
Mean pairwise identity | 81.93 |
Mean single sequence MFE | -27.84 |
Consensus MFE | -18.25 |
Energy contribution | -20.03 |
Covariance contribution | 1.78 |
Combinations/Pair | 1.19 |
Mean z-score | -2.18 |
Structure conservation index | 0.66 |
SVM decision value | 0.51 |
SVM RNA-class probability | 0.763416 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 16131682 102 - 20766785 U-----------GACGCAAUCAUUUGCAUCUUAUUUUAAUUCCUAUGAUUGUUUCACUGCCAGGCGGAAUAACCAGUUGCUUUUUGUCUUGUUGUUUGCUGCUUGGCU---GUUGU .-----------((.((((((((.....................)))))))).))((.(((((((((.(((((.((..((.....)))).)))))...))))))))).---))... ( -28.00) >DroPse_CAF1 30465 110 - 1 UCAUCUUAAAGUGACGCAAUCAUUUGAAUAUUAUUUCGAUUCCUAUGAUUGUUUCACUCUCUGGCGGAAUAACCAGUUGCUUGCUGGCUGGCUGUUC---GUUUCGUU---GUUGU .........(((((.((((((((..((((.........))))..)))))))).)))))....(((((((..(.((((((((....))).))))).).---.)))))))---..... ( -30.60) >DroSec_CAF1 20753 109 - 1 UGAAC-CAAAGUGACGCAAUCAUUUGCAUCUUAUUUUAAUUCCUAUGAUUGUUUCACUGCCAGGCGGAAUAACCAGUUGCUUUUUGUCGU---GUUUGCAGCUUGGCU---GUUGU .....-...(((((.((((((((.....................)))))))).)))))(((((((((.....))...(((..........---....)))))))))).---..... ( -28.64) >DroEre_CAF1 21322 112 - 1 UGAAC-CAAAGUGACGCAAUCAUUUGCAUUUUAUUUUAAUUCCUAUGAUUGUUUCACUGCCAGGCUGAAUAACCAGUUGCUGUUUGUCGUGUUGUUUGCUGCUUGGCU---GUUGU .....-...(((((.((((((((..(.(((.......))).)..)))))))).)))))(((((((.(((((((.....((.....))...)))))))...))))))).---..... ( -30.40) >DroYak_CAF1 21067 115 - 1 UGAAC-CAAAGUGACGCAAUCAUUUGCAUUUUAUUUUAAUUCCUAUGAUUGUUUCACUGCCAGGCUGAAUAACCAGUUGCUGCUUGUCGUGUUGUUUGCUGCUUGGCUGAUGUUGU .....-...(((((.((((((((..(.(((.......))).)..)))))))).)))))(((((((.(((((((((((....)))....).)))))))...)))))))......... ( -30.70) >DroAna_CAF1 21701 104 - 1 UCACC-CAAAGUGACGCAAUCAUUUGCAUUUUAUUUUAAUUUCUAUGAUUUUUUCAUUGGAUGGCUAAAUAACCAGUUGC-------CGUGUUGUUU-CUAUUUGGCU---GUUGU .((.(-((((..((.((((.(((..(((..((((((.....(((((((.....))).)))).....)))))).....)))-------.))))))).)-)..))))).)---).... ( -18.70) >consensus UGAAC_CAAAGUGACGCAAUCAUUUGCAUUUUAUUUUAAUUCCUAUGAUUGUUUCACUGCCAGGCGGAAUAACCAGUUGCUUUUUGUCGUGUUGUUUGCUGCUUGGCU___GUUGU .........(((((.((((((((.....................)))))))).)))))(((((((.(((((((.................)))))))...)))))))......... (-18.25 = -20.03 + 1.78)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:32:58 2006