Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 16,125,714 – 16,125,812 |
Length | 98 |
Max. P | 0.986614 |
Location | 16,125,714 – 16,125,812 |
---|---|
Length | 98 |
Sequences | 5 |
Columns | 98 |
Reading direction | forward |
Mean pairwise identity | 97.55 |
Mean single sequence MFE | -15.02 |
Consensus MFE | -13.30 |
Energy contribution | -13.70 |
Covariance contribution | 0.40 |
Combinations/Pair | 1.00 |
Mean z-score | -1.38 |
Structure conservation index | 0.89 |
SVM decision value | 0.26 |
SVM RNA-class probability | 0.658611 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 16125714 98 + 20766785 ACAAGAAAUCAAAUCAGAGCCAAACGAAAACGAAAGUCCAAAAUUGUGGAAAUUAAUUAUUGCGCAAGCGCGGUCACCGACCAAAAAUCCCAUAUAUA .............................((....)).......(((((............((....))..((((...)))).......))))).... ( -15.50) >DroSec_CAF1 14974 96 + 1 ACAAGAAAUCAAAUCAGAGCCAAACGAAAACGAAAGUCCAAAAUUGUGGAAAUUAAUUAUUGCGCAAGCGCGGUCACCGACCAAAAAUCCCAUAUA-- .............................((....)).......(((((............((....))..((((...)))).......)))))..-- ( -15.50) >DroSim_CAF1 15071 98 + 1 ACAAGAAAUCAAAUCAGAGCCAAACGAAAACGAAAGUCCAAAAUUGUGGAAAUUAAUUAUUGCGCAAGCGCGGUCACCGACCAAAAAUCCCAUAAAUA .............................((....))......((((((............((....))..((((...)))).......))))))... ( -16.70) >DroEre_CAF1 15520 98 + 1 ACAAGAAAUCAAAUCAGAGCCAAACGAAAACGAAAGUCCAAAAUUGUGGAAAUUAAUUAUUGCGCAAGCGCGGCCACCGACCAAAAAUCCCAUAUACU ................(.(((.........(....)((((......))))...........((....))..))))....................... ( -13.70) >DroYak_CAF1 15369 98 + 1 ACAAGAAAUCAAAUCAGAGCCAAACGAAAACGAAAGUCCAAAAUUGUGGAAAUUAAUUAUUGCGCAAGCGCGGCCACCGACCAAAAAUCCCAUAUAUA ................(.(((.........(....)((((......))))...........((....))..))))....................... ( -13.70) >consensus ACAAGAAAUCAAAUCAGAGCCAAACGAAAACGAAAGUCCAAAAUUGUGGAAAUUAAUUAUUGCGCAAGCGCGGUCACCGACCAAAAAUCCCAUAUAUA .............................((....)).......(((((............((....))..((((...)))).......))))).... (-13.30 = -13.70 + 0.40)
Location | 16,125,714 – 16,125,812 |
---|---|
Length | 98 |
Sequences | 5 |
Columns | 98 |
Reading direction | reverse |
Mean pairwise identity | 97.55 |
Mean single sequence MFE | -22.82 |
Consensus MFE | -21.50 |
Energy contribution | -21.50 |
Covariance contribution | 0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -1.75 |
Structure conservation index | 0.94 |
SVM decision value | 2.05 |
SVM RNA-class probability | 0.986614 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 16125714 98 - 20766785 UAUAUAUGGGAUUUUUGGUCGGUGACCGCGCUUGCGCAAUAAUUAAUUUCCACAAUUUUGGACUUUCGUUUUCGUUUGGCUCUGAUUUGAUUUCUUGU .....(..(((..((..(((((.(.(((((....)))...........((((......))))...............))).)))))..))..)))..) ( -21.50) >DroSec_CAF1 14974 96 - 1 --UAUAUGGGAUUUUUGGUCGGUGACCGCGCUUGCGCAAUAAUUAAUUUCCACAAUUUUGGACUUUCGUUUUCGUUUGGCUCUGAUUUGAUUUCUUGU --...(..(((..((..(((((.(.(((((....)))...........((((......))))...............))).)))))..))..)))..) ( -21.50) >DroSim_CAF1 15071 98 - 1 UAUUUAUGGGAUUUUUGGUCGGUGACCGCGCUUGCGCAAUAAUUAAUUUCCACAAUUUUGGACUUUCGUUUUCGUUUGGCUCUGAUUUGAUUUCUUGU .....(..(((..((..(((((.(.(((((....)))...........((((......))))...............))).)))))..))..)))..) ( -21.50) >DroEre_CAF1 15520 98 - 1 AGUAUAUGGGAUUUUUGGUCGGUGGCCGCGCUUGCGCAAUAAUUAAUUUCCACAAUUUUGGACUUUCGUUUUCGUUUGGCUCUGAUUUGAUUUCUUGU .....(..(((..((..(((((.(((((((....)))...........((((......))))...............)))))))))..))..)))..) ( -24.80) >DroYak_CAF1 15369 98 - 1 UAUAUAUGGGAUUUUUGGUCGGUGGCCGCGCUUGCGCAAUAAUUAAUUUCCACAAUUUUGGACUUUCGUUUUCGUUUGGCUCUGAUUUGAUUUCUUGU .....(..(((..((..(((((.(((((((....)))...........((((......))))...............)))))))))..))..)))..) ( -24.80) >consensus UAUAUAUGGGAUUUUUGGUCGGUGACCGCGCUUGCGCAAUAAUUAAUUUCCACAAUUUUGGACUUUCGUUUUCGUUUGGCUCUGAUUUGAUUUCUUGU .....(..(((..((..(((((.(.(((((....)))...........((((......))))...............))).)))))..))..)))..) (-21.50 = -21.50 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:32:55 2006