| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 16,122,806 – 16,122,906 |
| Length | 100 |
| Max. P | 0.691201 |
| Location | 16,122,806 – 16,122,906 |
|---|---|
| Length | 100 |
| Sequences | 6 |
| Columns | 113 |
| Reading direction | forward |
| Mean pairwise identity | 79.62 |
| Mean single sequence MFE | -31.07 |
| Consensus MFE | -20.42 |
| Energy contribution | -19.70 |
| Covariance contribution | -0.72 |
| Combinations/Pair | 1.29 |
| Mean z-score | -1.51 |
| Structure conservation index | 0.66 |
| SVM decision value | 0.33 |
| SVM RNA-class probability | 0.691201 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 16122806 100 + 20766785 CCCACUCGCCACUGGCGCAAUCCGGCAGUGGCACCAUUACCGUCUGCAGCUCCUCGCAGCAAAUCUGAAAGUAAUGGAGCAC--GUUGA---UAA--------CCAAUCGGAA .((....(((((((.((.....)).))))))).(((((((..(((((.((.....)).))).....))..))))))).....--.....---...--------......)).. ( -32.20) >DroPse_CAF1 21825 101 + 1 CCCAUUCACCGCUGGCACAGUCUGGCAGCGGCACCAUCACCGUCUGCAGCUCCUCGCAGCAGAUCUGAUCGGAAGA--AAAA--GUCAACCAUUA--------GCAGUAGAAG ....(((.((((((.((.....)).))))))..((((((..((((((.((.....)).)))))).)))).))..))--)...--...........--------.......... ( -28.50) >DroSec_CAF1 12092 100 + 1 CCCACUCGCCACUGGCGCAAUCCGGCAGUGGCACCAUCACCGUCUGCAGCUCCUCGCAGCAAAUCUGAAAGUAAUGGAGCAC--GUUGA---UAA--------CUAAACGAAA .....(((((((((.((.....)).)))))))...((((.(((.....(((((.(.(((.....)))...)....)))))))--).)))---)..--------......)).. ( -30.00) >DroSim_CAF1 12182 102 + 1 CCCACUCGCCACUGGCGCAAUCCGGCAGUGGCACCAUCACCGUCUGCAGCUCCUCGCAGCAAAUCUGAAAGUAAUGGAGCAGGAGUUGA---UAA--------CUAAUCGGAA .((....(((((((.((.....)).))))))).........((...((((((((.((..((...(.....)...))..)))))))))).---..)--------).....)).. ( -33.00) >DroYak_CAF1 12478 108 + 1 CCCACUCGCCGCUGGCGCAGUCCGGCAGUGGCACCAUCACCGUUUGCAGCUCCUCGCAGCAUAUCUGAAAGUAAUGGAGCAC--GUUGA---UAACUUUAUGACUAAACGGAA .......(((((((.((.....)).))))))).......(((((((..(((((.(.(((.....)))...)....)))))..--(((.(---((....))))))))))))).. ( -33.30) >DroPer_CAF1 24072 101 + 1 CCCAUUCUCCGCUGGCACAGUCUGGCAGCGGCACCAUCACCGUCUGCAGCUCCUCGCAGCAGAUCUGAUCGGAAGA--AAAA--GUCAACCAUUA--------GCAGUAGCAG ....((((((((((.((.....)).))))))..((((((..((((((.((.....)).)))))).)))).)).)))--)...--...........--------((....)).. ( -29.40) >consensus CCCACUCGCCACUGGCGCAAUCCGGCAGUGGCACCAUCACCGUCUGCAGCUCCUCGCAGCAAAUCUGAAAGUAAUGGAGCAC__GUUGA___UAA________CCAAUCGGAA .......(((((((.((.....)).))))))).........(.((((........)))))..................................................... (-20.42 = -19.70 + -0.72)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:32:54 2006