Locus 4943

Sequence ID 2R_DroMel_CAF1
Location 16,120,189 – 16,120,292
Length 103
Max. P 0.524389
window7920

overview

Window 0

Location 16,120,189 – 16,120,292
Length 103
Sequences 6
Columns 103
Reading direction forward
Mean pairwise identity 84.08
Mean single sequence MFE -42.28
Consensus MFE -30.11
Energy contribution -31.62
Covariance contribution 1.51
Combinations/Pair 1.31
Mean z-score -1.85
Structure conservation index 0.71
SVM decision value -0.02
SVM RNA-class probability 0.524389
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 16120189 103 + 20766785
GCACUAACAGUCUGCCAAGCCUUGGUAGCUUCAGCCAGAACCAGGGUGGCACUAGCAGCCUGCCCAGCUUGGGCAGCUUUGGUCAGAAUCCAGGCGGACCCGG
.........(((((((..((((((((.((....))....)))))))).(.(((((.(((.(((((.....))))))))))))))........))))))).... ( -41.00)
>DroSec_CAF1 9498 101 + 1
GCACUAACAGUCUAC-AAG-CUUGGUAGCUUCAGCCAGAUCCAGGGUGGCACUAGCAGCCUGCCCAGUUUGGGCAGCUUUGGUCAGAAUCCUGGCGGACCCGG
.........((((..-(((-((....)))))..(((((((((((((((((.......)))(((((.....)))))))))))).....)).))))))))).... ( -34.40)
>DroEre_CAF1 10038 103 + 1
GCACAAACAGUCUGCCAAGCCUUGGUAGCUUCAGCCAGAACCAGGGUGGUACCAGCAGUCUGCCCAGUUUGGGCAGCUUUGGUCAGAAUCCUGGCGGACCCGG
.........((((((((.((((((((.((....))....)))))))).(.(((((.((.((((((.....)))))))))))))).......)))))))).... ( -43.90)
>DroYak_CAF1 9938 103 + 1
GCACUAACAGUUUGCCAAGCCUUGGUAGCUUCAGCCAGAACCAGGGCGGUACCAGCAGUCUGCCCAGUUUGGGCAGCUUUGGUCAGAAUCCUGGCGGACCCGG
.........((((((((.((((((((.((....))....)))))))).(.(((((.((.((((((.....)))))))))))))).......)))))))).... ( -43.50)
>DroAna_CAF1 9828 103 + 1
GGAGCAACAGCUUGCCCAGCUUAGGCAGCUUCGGUCAGAACCAGGGCGGCAACAACAGCCUGCCCAGCUUGAGCAGCUUCGGCCAGAAUCCGGGCGGUGCUGG
.......((((((((((.((((((((......(((....))).(((((((.......))).)))).)))))))).((....))........)))))).)))). ( -48.60)
>DroPer_CAF1 21355 103 + 1
GCAGCAACAGCCUGCCGAGUCUCGGCAACUUCAGCCAGAGCCAGGGCGGCACCAAUAGUCUGCCCAGUCUGGGCAGCUUUGGCCAGAAUCAGGGCGGCAACAG
...((....((((((((.....))))...(((.((((((((..((((((.((.....)))))))).((....)).))))))))..)))...)))).))..... ( -42.30)
>consensus
GCACUAACAGUCUGCCAAGCCUUGGUAGCUUCAGCCAGAACCAGGGCGGCACCAGCAGCCUGCCCAGUUUGGGCAGCUUUGGUCAGAAUCCUGGCGGACCCGG
.........((((((((.((((((((.((....))....))))))))((..((((.((.((((((.....)))))))))))))).......)))))))).... (-30.11 = -31.62 +   1.51)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:32:50 2006