Locus 4942

Sequence ID 2R_DroMel_CAF1
Location 16,118,110 – 16,118,224
Length 114
Max. P 0.555298
window7919

overview

Window 9

Location 16,118,110 – 16,118,224
Length 114
Sequences 5
Columns 114
Reading direction forward
Mean pairwise identity 84.14
Mean single sequence MFE -27.86
Consensus MFE -18.26
Energy contribution -19.50
Covariance contribution 1.24
Combinations/Pair 1.20
Mean z-score -1.77
Structure conservation index 0.66
SVM decision value 0.04
SVM RNA-class probability 0.555298
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 16118110 114 + 20766785
CCCGCUCAAUGGCAUUUAGUAAAGUUCUAUACAUAAUCAACUAUUUAGACCAGUGGCGCCACCAAACGACAGUUUGUGGAAACUUUUGUGGCCCCCCGUUGGGCGCCAAAAAUA
..((((((((((...........(.((((...(((......))).)))).)...((.((((((((((....))))).(....)....))))))).))))))))))......... ( -31.40)
>DroSec_CAF1 7415 114 + 1
CCCACUCAAUGGCAUUUAGUAAAGUUCUAUACAUAAUCAACUAUUUAGCUCAAUGGCGCCACCAAACGACAGUUUUUGGAAACUCUCGUGGCCCCCCGUUGGGCGCCAAAAAUA
.........((((.....(((........)))...............(((((((((.(((((.((((....))))..(....)....)))))...)))))))))))))...... ( -31.20)
>DroSim_CAF1 7501 112 + 1
CCGACUCAACG--AUUUAGUAAAGUUCUAUACAUAAUCAACUAUUUAGCCCUGUGGCGCCACCAAACGACAGUUUUGGGAAACUCUCGUGGCCCCCCGUUGGGCGCCAAAAAUA
.((.(((((((--(((..(((........)))..)))).........(((....)))(((((.((((....)))).(((.....)))))))).....))))))))......... ( -25.60)
>DroEre_CAF1 7955 105 + 1
ACCAUUCAAUGGC---------AGUCCUAUACAUAAUCUACUAUUUAGCUCAGUGGCGCCACUAAACGACAGUUUGUCGAAACUCUAGUUGCCCCCCGUUGGGCGCCAAAAAUA
.........((((---------.................((((........((((....))))...((((.....))))......)))).((((......))))))))...... ( -23.90)
>DroYak_CAF1 7812 109 + 1
ACCACUUAAUGGCUUU-----AAGUUUUAUACAUAAUCUAUUAUUUAGCUCGGUGGCGCCACCAAACGACAGUUUGUCAAAAUUCUAGCUGUCCCCCGUUGGGCGCCAAAAAUG
(((((((((.....))-----))))............(((.....)))...)))((((((....((((((((((.(........).)))))))....))).))))))....... ( -27.20)
>consensus
CCCACUCAAUGGCAUUUAGUAAAGUUCUAUACAUAAUCAACUAUUUAGCUCAGUGGCGCCACCAAACGACAGUUUGUGGAAACUCUAGUGGCCCCCCGUUGGGCGCCAAAAAUA
.........((((..........((.....))...............(((((((((.((((((((((....)))))...........)))))...)))))))))))))...... (-18.26 = -19.50 +   1.24)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:32:49 2006