Locus 4941

Sequence ID	2R_DroMel_CAF1
Location	16,117,220 – 16,117,312
Length	92
Max. P	0.869430

overview

Window 8

Location	16,117,220 – 16,117,312
Length	92
Sequences	5
Columns	93
Reading direction	reverse
Mean pairwise identity	79.59
Mean single sequence MFE	-15.23
Consensus MFE	-5.90
Energy contribution	-6.90
Covariance contribution	1.00
Combinations/Pair	1.18
Mean z-score	-2.38
Structure conservation index	0.39
SVM decision value	0.86
SVM RNA-class probability	0.869430
Prediction	RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 16117220 92 - 20766785
UUUCUUGCCCAACUAAAUUCGCAACUUUAUUGCUGUACAAACAGCUCAUAAAAAACUAUAACACCCUCCGUUGCGGCAUAGAAAGUUUA-UUU
(((((((((((((((((........))))..(((((....)))))........................)))).)))).))))).....-... ( -18.00)
>DroSec_CAF1 6539 85 - 1
--------CUAACUAAAUUCGCAACUUUAUUGCUGUACAAACAGCUCAUAAAAAACUAUAGCACCCUCCGCUGCGGCAUAUAAAGUUUAAUUC
--------..............((((((((.(((((....)))))..........(..((((.......))))..)...))))))))...... ( -14.30)
>DroSim_CAF1 6617 85 - 1
--------CCAACUAAAUUCGCAACUUUAUUGCUGUACAAACAGCUCAUAAAAAACUAUAGCACCCUCUGCUGCGGCAUAGAAAGUUUAAUUC
--------....(((...((((...(((((.(((((....)))))..))))).......((((.....))))))))..)))............ ( -15.10)
>DroEre_CAF1 6745 84 - 1
CUUCCCGCUCAACUAAAUUCUCAACUUUAUUGCUGUACAAACAGGUCAUAAA-AACUAUAGAACCCUCUGCGGC--------AAGUUAUAUUC
(((.((((.................(((((.(((((....))).)).)))))-......(((....))))))).--------)))........ ( -10.90)
>DroYak_CAF1 6743 92 - 1
CUAUCCGUUCAACUUAAUUCCCAACUUGAUUGCUGUACAAAUAGCUCAUAAA-AACUAUAGCACCAUCCGCAGCAGUAUAGAAAGUUGAAUUC
......(((((((((......(.....)((((((((.......(((.(((..-...)))))).......)))))))).....))))))))).. ( -17.84)
>consensus
_U____G_CCAACUAAAUUCGCAACUUUAUUGCUGUACAAACAGCUCAUAAAAAACUAUAGCACCCUCCGCUGCGGCAUAGAAAGUUUAAUUC
......................((((((...(((((....)))))..........((.((((.......)))).)).....))))))...... ( -5.90 =  -6.90 +   1.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:32:48 2006