Locus 494

Sequence ID 2R_DroMel_CAF1
Location 2,713,432 – 2,713,527
Length 95
Max. P 0.735614
window939

overview

Window 9

Location 2,713,432 – 2,713,527
Length 95
Sequences 6
Columns 99
Reading direction forward
Mean pairwise identity 77.89
Mean single sequence MFE -21.98
Consensus MFE -14.96
Energy contribution -15.18
Covariance contribution 0.22
Combinations/Pair 1.14
Mean z-score -1.34
Structure conservation index 0.68
SVM decision value 0.44
SVM RNA-class probability 0.735614
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 2713432 95 + 20766785
AC----ACCACCGCCAUUGCAAUCCUUCGCAGCCCAUCCAUAUUGAUUUUGGUUUUAAUUAACAAAGCCAUUAGGGGCACUCGCCUGCGAGUUGCAAAU
..----..........(((((((...((((((((((((......)))..(((((((.......)))))))...)))((....))))))))))))))).. ( -25.00)
>DroPse_CAF1 3843 93 + 1
AG----AUUGCCACAGAAGAGG--UCUUGCGGCACAUUCAUAUUGAUUUUGGUUUUAAUUAACAAAGCCAUUAGGAGCACUUGGCCACAAAAUGCAACA
.(----(.((((.(((......--..))).))))...))...((((((((((((......)))...((((..((.....))))))..)))))).))).. ( -17.80)
>DroSec_CAF1 5030 99 + 1
ACGCCAACCACCACCAUUUCAAUCCUUCGCAGCCCAUCCAUAUUGAUUUUGGUUUUAAUUAACAAAGCCAUUAGGGGCACUCGCCUGCGAGUUGCAAAU
............................((((((((((......)))..(((((((.......)))))))....))))(((((....)))))))).... ( -22.00)
>DroYak_CAF1 5311 95 + 1
GC----ACCACCACAGUUGCAAGUCCUCGCAGCCCAUCCAUAUUGAUUUUGGUUUUAAUUAACAAAGCCAUUAGGGGCACUCGCCCGCGAGUUGCAAAU
..----..........((((((...(((((...................(((((((.......)))))))....((((....))))))))))))))).. ( -26.50)
>DroAna_CAF1 4477 88 + 1
---------GCCAGCAAUGCGAUC--UUGCGACCCAUUCAUAUUGAUUUUGGUUUUAAUUAACAAAGCCAUUAGGGGCACUCGCCUGCGAGUUGCAAGU
---------........(((((.(--((((...................(((((((.......)))))))....((((....))))))))))))))... ( -22.80)
>DroPer_CAF1 3854 93 + 1
AG----AUUGCCACAGAAGAGG--UCUUGCGGCACAUUCAUAUUGAUUUUGGUUUUAAUUAACAAAGCCAUUAGGAGCACUUGGCCACAAAAUGCAACA
.(----(.((((.(((......--..))).))))...))...((((((((((((......)))...((((..((.....))))))..)))))).))).. ( -17.80)
>consensus
AC____ACCACCACAAAUGCAAUCCCUCGCAGCCCAUCCAUAUUGAUUUUGGUUUUAAUUAACAAAGCCAUUAGGGGCACUCGCCCGCGAGUUGCAAAU
............................((((((((((......)))..(((((((.......)))))))....))))(((((....)))))))).... (-14.96 = -15.18 +   0.22)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:40:06 2006