Locus 4939

Sequence ID 2R_DroMel_CAF1
Location 16,109,110 – 16,109,206
Length 96
Max. P 0.999461
window7916

overview

Window 6

Location 16,109,110 – 16,109,206
Length 96
Sequences 5
Columns 105
Reading direction forward
Mean pairwise identity 89.53
Mean single sequence MFE -17.82
Consensus MFE -17.60
Energy contribution -17.32
Covariance contribution -0.28
Combinations/Pair 1.14
Mean z-score -2.15
Structure conservation index 0.99
SVM decision value 3.62
SVM RNA-class probability 0.999461
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 16109110 96 + 20766785
CGAUUUGAAGGUGGCUACCACUUCUUUAAGAUCUUCCCACUCACACUUCAAAUAAUGUACUA----CUACACCACCUGUACUUCAAGUCGAGUCAAAUUU-----
((((((((((((((......(((....)))......))))...............((((...----.)))).........))))))))))..........----- ( -17.50)
>DroSec_CAF1 30912 96 + 1
CGAUUUGAAGGUGGCUACCACUUCUUUAAGCUCUUCCCACUCACACUUCAAAUAAUGUACUA----CUACACCACCUGUACUUCAAGUCGAGUCAAAUUU-----
((((((((((((((......(((....)))......))))...............((((...----.)))).........))))))))))..........----- ( -17.50)
>DroSim_CAF1 31017 100 + 1
CGAUUUGAAGGUGGCUACCACUUCUUUAAGCUCUUCCCACUCACACUUCAAAUAAUGUACUACUUACUACACCACCUGUACUUCAAGUCGAGUCAAAUUU-----
((((((((((((((......(((....)))......))))...............((((........)))).........))))))))))..........----- ( -17.50)
>DroEre_CAF1 33218 98 + 1
CGAUUUGAAGGUGGCUACCAUUUCUUUAAGCUCUGCCCACUCACUCUUCAAAUAAUGUAC-------UACACCACCUGUACUUCAAGUCGAGUCAAAUUUUAAGC
(((((((((((((((...................).))))....................-------((((.....))))))))))))))............... ( -17.01)
>DroYak_CAF1 30732 93 + 1
CGGCUUGAAGGUGGCUACCACUUUUUUAAGCUCUGCCCACAUACACUCCAAAUAAUGUAC-------CACACCACCUGUACUUCAAGUCGAGUCAAAUUA-----
(((((((((((((((.....(((....)))....).)))).((((..........)))).-------.............))))))))))..........----- ( -19.60)
>consensus
CGAUUUGAAGGUGGCUACCACUUCUUUAAGCUCUUCCCACUCACACUUCAAAUAAUGUACUA____CUACACCACCUGUACUUCAAGUCGAGUCAAAUUU_____
((((((((((((((......(((....)))......))))...............((((........)))).........))))))))))............... (-17.60 = -17.32 +  -0.28)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:32:46 2006