Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 16,103,567 – 16,103,667 |
Length | 100 |
Max. P | 0.974319 |
Location | 16,103,567 – 16,103,667 |
---|---|
Length | 100 |
Sequences | 5 |
Columns | 101 |
Reading direction | reverse |
Mean pairwise identity | 95.43 |
Mean single sequence MFE | -16.63 |
Consensus MFE | -14.20 |
Energy contribution | -14.20 |
Covariance contribution | 0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -1.95 |
Structure conservation index | 0.85 |
SVM decision value | 1.73 |
SVM RNA-class probability | 0.974319 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 16103567 100 - 20766785 AAACGAAAAAUACCUCGGCCAAAAAAGGCAAAUAAAAGCGAAUUUUUU-CGCAAAACUGGAAAUCUAAACAGAGACAAAGGAGAUUCGUCACAAUCGCCAA ...(((........)))(((......)))........(((((....))-)))....(((..........))).......((.((((......)))).)).. ( -18.60) >DroSec_CAF1 25466 101 - 1 AAACGAAAAAUACCUCGGCCAAAAAAGGCAAAUAAAAGCGAAUUUUUUGCACAAAACUGGAAAUCUAAACAGAGACAUAGGAGAUUCGUCACAAUCGCCAA ...(((...........(((......)))........((((((((((((.......(((..........))).....)))))))))))).....))).... ( -16.40) >DroSim_CAF1 25531 101 - 1 AAACGAAAAAUACCUCGGCCAAAAAAGGCAAAUAAAAGCGAAUUUUUUGCACAAAACUGGAAAUCUAAACAGAGACAAAGGAGAUUCGUCACAAUCGCCAA ...(((...........(((......)))........(((((((((((........(((..........)))......))))))))))).....))).... ( -16.34) >DroEre_CAF1 27937 98 - 1 AC---AAAAAUACCUCGGCCAAAAAAGGCAAAUAAAAGCGAAUUUUUUGCGCAAAACUGGAAAUCUAAGCAGAGACAAAGGAGAUUCGUCACAAUCGCCAA ..---........(((.(((((((((.((........))...))))))).)).....(((....)))....))).....((.((((......)))).)).. ( -15.80) >DroYak_CAF1 25143 98 - 1 AC---AAAAAUACCUCAGCCAAAAAAGGCAAAUAAAAGCGAAUUUUUUGCGCAAAACUGGAAAUCUAAACAGAGACAAAGGAGAUUCGUCACAAUCGCCAA ..---........(((.(((((((((.((........))...))))))).)).....(((....)))....))).....((.((((......)))).)).. ( -16.00) >consensus AAACGAAAAAUACCUCGGCCAAAAAAGGCAAAUAAAAGCGAAUUUUUUGCGCAAAACUGGAAAUCUAAACAGAGACAAAGGAGAUUCGUCACAAUCGCCAA ..........................(((........(((((((((((........(((..........)))......))))))))))).......))).. (-14.20 = -14.20 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:32:45 2006