| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 16,099,025 – 16,099,127 |
| Length | 102 |
| Max. P | 0.935931 |
| Location | 16,099,025 – 16,099,127 |
|---|---|
| Length | 102 |
| Sequences | 6 |
| Columns | 107 |
| Reading direction | reverse |
| Mean pairwise identity | 73.70 |
| Mean single sequence MFE | -25.80 |
| Consensus MFE | -14.33 |
| Energy contribution | -14.56 |
| Covariance contribution | 0.23 |
| Combinations/Pair | 1.40 |
| Mean z-score | -1.93 |
| Structure conservation index | 0.56 |
| SVM decision value | 1.25 |
| SVM RNA-class probability | 0.935931 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 16099025 102 - 20766785 ----AACAAUUUUCUGCUGCGGAUGGGGGCAGUACUGUUUUUUUAACAUUGAGUAUUGCACUUUUCACAGCCCGAAAAUGUUAGCAACUGCCUU-AUACUAACAAUU ----....((((((.((((.(((.((..(((((((((((.....)))....)))))))).)).))).))))..))))))(((((..........-...))))).... ( -25.12) >DroPse_CAF1 24864 101 - 1 GGUGGAUACCUUCAAGCUGGGGGAUGGG-CAAUACUGUGUUGUAUUUCACCAGUAUUGCACACCCACUGGCCUGAAAGUGCCUACUGCUGGGUUC-----AACAACU (((((.(((.((((.((..((((.((.(-((((((((((........)).))))))))).))))).)..)).)))).))).))))).........-----....... ( -38.30) >DroSec_CAF1 20418 102 - 1 ----AACAAUUUUCUGCUGCGCAUUGGGGCACUACUGUUUUUUUUUAAUUGAGUAUUGCACUUUUCACAGCCUUAAAAUGUUAGCAACUGCCUA-AUACUAACAAUU ----...........((((.(.(..((.(((.((((...............)))).))).))..)).)))).......((((((..........-...))))))... ( -14.98) >DroSim_CAF1 20611 102 - 1 ----AACAAUUUUCUGCUGCGCAUUGGGGCACUACUGUUUUUUUUAAAUUGAGUAUUGCACUUUUCACAGCCUUAAAAUGUUAGCAACUGCCUA-AUACUAACAAUU ----...........((((.(.(..((.(((.((((((((.....))))..)))).))).))..)).)))).......((((((..........-...))))))... ( -15.82) >DroEre_CAF1 21710 102 - 1 ----AACAAUUUUCGGCUGUGGAGUGGGCUAGUACUGUGAUUUUAACAUUGAGUAUUGCACAUUCCCCAGCCUGAAAGUGUUUGCAUUUGCCAA-AUAUUAAAAAUU ----.......((((((((.((((((.((.(((((((((.......)))..)))))))).)))))).))))).)))(((((((((....).)))-)))))....... ( -31.00) >DroYak_CAF1 20894 102 - 1 ----AACAAUUUUCGGCUGUGGAUUGGGCUAGUACUGUGAUUUUAGCAUUAAGUAUUGCACAUUCCCCAGCCUGAAAGUGUUAGUAACUGCCAA-CUAAUAACAAUU ----....(((((((((((.(((.((.((.((((((.((((......)))))))))))).)).))).))))).))))))((((((........)-)))))....... ( -29.60) >consensus ____AACAAUUUUCUGCUGCGGAUUGGGGCAGUACUGUGUUUUUAACAUUGAGUAUUGCACAUUCCACAGCCUGAAAAUGUUAGCAACUGCCUA_AUACUAACAAUU ....((((.((((..((((.(((.((.(.(((((((...............)))))))).)).))).))))..)))).))))......................... (-14.33 = -14.56 + 0.23)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:32:39 2006