Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 2,707,040 – 2,707,135 |
Length | 95 |
Max. P | 0.907784 |
Location | 2,707,040 – 2,707,135 |
---|---|
Length | 95 |
Sequences | 4 |
Columns | 115 |
Reading direction | forward |
Mean pairwise identity | 68.89 |
Mean single sequence MFE | -35.68 |
Consensus MFE | -16.35 |
Energy contribution | -17.66 |
Covariance contribution | 1.31 |
Combinations/Pair | 1.16 |
Mean z-score | -2.10 |
Structure conservation index | 0.46 |
SVM decision value | 0.85 |
SVM RNA-class probability | 0.865376 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 2707040 95 + 20766785 GACUUAU-----------AUAGUGUACAUAGUGGGAUGCGGUGGAAGCGGUGGAA--AAAGCGA--GGAGCUG-----GCGCAAUUUCAGUGCUCUGCUCUGGCGAGCUCCGCUU .......-----------...((...(((.((.....)).)))...))((((((.--...((..--(((((.(-----((((.......)))))..))))).))....)))))). ( -28.30) >DroSec_CAF1 3362 105 + 1 GGCUUAUACAUAGUGUACAUAGUGUACAUAGUGGGAUGCGGUGGAAGCGGCGGAA---AAGCGA--GGAGCUG-----GCGCAAUUUCAGAGCUCUGCUCUGGCGAGCUCCGCUU .((((...(((.((((((.....)))))).)))...(((.((....)).)))...---))))..--((((((.-----((.......((((((...)))))))).)))))).... ( -38.91) >DroYak_CAF1 3571 97 + 1 GGCUUAU-----------AAAGUGUGCAUAGUGAAAUACGCUGGAAGCGGUGGAA--UAAGCGAGUGGAGCUA-----GCGCAAUUUUAGAGCUCUGCUUUGGCGAGCUCCGCUU .((((((-----------..(.(((...(((((.....)))))...))).)...)--)))))((((((((((.-----((.(((...(((....)))..))))).)))))))))) ( -35.30) >DroAna_CAF1 3131 93 + 1 UG----G-----------GAGCUGGGCGCUGAG-----AGCUGGGAGUAAUGUAAGGCAAGCGA--GUGGCUGCAUUUCAGCAAUUUUAGUGCUCUGCUACGGCGAGCUCCGCUU ..----(-----------(((((((((((((((-----(((((..(..........(((.((..--...))))).)..))))..)))))))))))(((....))))))))).... ( -40.20) >consensus GGCUUAU___________AAAGUGUACAUAGUGGGAUGCGCUGGAAGCGGUGGAA___AAGCGA__GGAGCUG_____GCGCAAUUUCAGAGCUCUGCUCUGGCGAGCUCCGCUU ............................................((((((((.......(((.......))).......))).......((((((.((....))))))))))))) (-16.35 = -17.66 + 1.31)
Location | 2,707,040 – 2,707,135 |
---|---|
Length | 95 |
Sequences | 4 |
Columns | 115 |
Reading direction | reverse |
Mean pairwise identity | 68.89 |
Mean single sequence MFE | -24.98 |
Consensus MFE | -13.90 |
Energy contribution | -14.40 |
Covariance contribution | 0.50 |
Combinations/Pair | 1.00 |
Mean z-score | -1.75 |
Structure conservation index | 0.56 |
SVM decision value | 1.06 |
SVM RNA-class probability | 0.907784 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 2707040 95 - 20766785 AAGCGGAGCUCGCCAGAGCAGAGCACUGAAAUUGCGC-----CAGCUCC--UCGCUUU--UUCCACCGCUUCCACCGCAUCCCACUAUGUACACUAU-----------AUAAGUC ..((((.((((....)))).((((...((((..(((.-----.......--.)))..)--)))....))))...)))).......((((((...)))-----------))).... ( -22.70) >DroSec_CAF1 3362 105 - 1 AAGCGGAGCUCGCCAGAGCAGAGCUCUGAAAUUGCGC-----CAGCUCC--UCGCUU---UUCCGCCGCUUCCACCGCAUCCCACUAUGUACACUAUGUACACUAUGUAUAAGCC ..(.(((((((((((((((...)))))).....))).-----.))))))--.)((((---.......((.......)).........(((((.....)))))........)))). ( -28.00) >DroYak_CAF1 3571 97 - 1 AAGCGGAGCUCGCCAAAGCAGAGCUCUAAAAUUGCGC-----UAGCUCCACUCGCUUA--UUCCACCGCUUCCAGCGUAUUUCACUAUGCACACUUU-----------AUAAGCC .((.((((((.(((((...((....))....))).))-----.)))))).)).(((((--(......((.....))((((......)))).......-----------)))))). ( -23.60) >DroAna_CAF1 3131 93 - 1 AAGCGGAGCUCGCCGUAGCAGAGCACUAAAAUUGCUGAAAUGCAGCCAC--UCGCUUGCCUUACAUUACUCCCAGCU-----CUCAGCGCCCAGCUC-----------C----CA ..(.((((((.(.(((.(.(((((........(((......)))((...--..))...................)))-----))).))).).)))))-----------)----). ( -25.60) >consensus AAGCGGAGCUCGCCAGAGCAGAGCACUAAAAUUGCGC_____CAGCUCC__UCGCUU___UUCCACCGCUUCCACCGCAUCCCACUAUGCACACUAU___________AUAAGCC (((((((((((((....)).)))))).......((.........))......))))).......................................................... (-13.90 = -14.40 + 0.50)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:40:05 2006