Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 16,088,916 – 16,089,012 |
Length | 96 |
Max. P | 0.729402 |
Location | 16,088,916 – 16,089,012 |
---|---|
Length | 96 |
Sequences | 5 |
Columns | 117 |
Reading direction | forward |
Mean pairwise identity | 82.91 |
Mean single sequence MFE | -26.33 |
Consensus MFE | -15.70 |
Energy contribution | -15.38 |
Covariance contribution | -0.32 |
Combinations/Pair | 1.21 |
Mean z-score | -2.16 |
Structure conservation index | 0.60 |
SVM decision value | 0.42 |
SVM RNA-class probability | 0.729402 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 16088916 96 + 20766785 AAAGGGUAUA------UUGCAAUCGUGCAAAUAAAUGC---------------ACAUAGUAUUUUUGCAUGUCUAAUGGAUUUACGGCACAUUAAGCUAACAUUUUCAUGGCGUGCA ..........------.(((.((.(((((......)))---------------)))).)))....((((((((..(((((.....(((.......)))......))))))))))))) ( -20.90) >DroSec_CAF1 10406 96 + 1 AAAGGGUAUA------UUGCAAUCGUGCAAAUAAAUGC---------------ACAUAGCACUUUUGCAUGUCUAAUGGAUUUACGGCACAUUAGGCUAACAUUUCCAUGACGUGCA ..........------.(((.((.(((((......)))---------------)))).)))....((((((((..(((((.....(((.......)))......))))))))))))) ( -26.20) >DroSim_CAF1 10659 96 + 1 AAAGGGUAUA------UUGCAAUCGUGCAAAUAAGUGC---------------ACAUAGUACUUUUGCAUGUCUAAUGGAUUUACGGCACAUUAGGCUAACAUUUCCAUGGCGUGCA .((((((((.------..(....)(((((......)))---------------))...))))))))(((((((..(((((.....(((.......)))......)))))))))))). ( -25.50) >DroEre_CAF1 10569 110 + 1 AAAGGGUAUA------UUGCAAUCGUGCAAUUAAAUGCUGCAGCAUUACUUGCA-GCAGUACUUUUGCAUAUCUAAUGGAUUUACGGCACAUUAAGUUAACAAUUUUGUGCCGUGCA .(((((((((------(((((....))))))....((((((((......)))))-)))))))))))((..(((.....)))..((((((((...............)))))))))). ( -34.66) >DroYak_CAF1 10882 111 + 1 AAAGGGUAUACAUUUAAUGCAAUCGUGCAAAUAAAUGCUGGAA------GUGCACACAGUACUUUUGCAUGUCUAAUGGAUUUACGGCACAUUAAGUUAACAUUUUUAUGCCGUGCA ....((((((...(((((..(((.((((......((((.((((------((((.....))))))))))))(((.....))).....)))))))..)))))......))))))..... ( -24.40) >consensus AAAGGGUAUA______UUGCAAUCGUGCAAAUAAAUGC_______________ACAUAGUACUUUUGCAUGUCUAAUGGAUUUACGGCACAUUAAGCUAACAUUUUCAUGCCGUGCA .((((((((.........((....))(((......)))....................))))))))(((((((..(((((.....(((.......)))......)))))))))))). (-15.70 = -15.38 + -0.32)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:32:26 2006