Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 16,086,075 – 16,086,178 |
Length | 103 |
Max. P | 0.596926 |
Location | 16,086,075 – 16,086,178 |
---|---|
Length | 103 |
Sequences | 5 |
Columns | 106 |
Reading direction | reverse |
Mean pairwise identity | 90.50 |
Mean single sequence MFE | -31.88 |
Consensus MFE | -24.70 |
Energy contribution | -25.58 |
Covariance contribution | 0.88 |
Combinations/Pair | 1.08 |
Mean z-score | -1.53 |
Structure conservation index | 0.77 |
SVM decision value | 0.13 |
SVM RNA-class probability | 0.596926 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 16086075 103 - 20766785 UUAAAGGAGGCUCCACUGUGCUGGGUCUGUUGCACCCAGGCACAGGUGAACAGCGAACGUGACGUGGAAACAGCGAC-AAAUUGUCA-AGGGAGCUUAGCAUAAA- .......(((((((.((((((((((((....).))))).)))))).......((((...((.((((....)).)).)-)..))))..-..)))))))........- ( -36.00) >DroSec_CAF1 7606 105 - 1 UUAAACGAGGCUCCACUGUACUGAGUUGGUUGCACCCAGGGACAGGUGAACAGCGAACGUGACGUGGAAACAGCGGCCUAAUUGUCAAAGGGAGCUUAUCAUACA- .......(((((((.((....((((((.((((((((........))))..)))).)))....((((....)).)).........))).)))))))))........- ( -28.80) >DroSim_CAF1 7816 103 - 1 UUAAAGGAGUCUUCACUGUACUGAGUUGGUUGCACCCAGGCACAGGUGAACAGCGAACGUGACGUGGAAACAGCGAC-AAAUUGUCA-AGGGAGCUUAGCAUAAA- ........((.(((((.((.....(((.((((((((........))))..)))).)))...))))))).)).(((((-.....)))(-((....))).)).....- ( -24.20) >DroEre_CAF1 7649 103 - 1 UCAAAGGAGGCUCCACUGUGCUGGGUUGGUUGCACCCGGGCACAGGUGAACACCGAUCGUGACGGGGAAACAGCGAC-AAAUUGUCA-AGGGAGCUUAACAUAAA- .......(((((((.(((((((.((.((....)).)).)))))))((.....(((.......)))(....).))(((-.....))).-..)))))))........- ( -35.20) >DroYak_CAF1 7885 104 - 1 AGAAAGGAGGCUCCACUGUGCUGGGUUGGUUGCACCCAGGCACAGGUGAACACCGAUCGUGACGUGGAAACAGCGAC-AAAUUGUCA-AGGGAGCUUAACAUAAAA .......(((((((.(((((((((((.......))))).)))))).........(((..((.((((....)).)).)-)....))).-..)))))))......... ( -35.20) >consensus UUAAAGGAGGCUCCACUGUGCUGGGUUGGUUGCACCCAGGCACAGGUGAACAGCGAACGUGACGUGGAAACAGCGAC_AAAUUGUCA_AGGGAGCUUAACAUAAA_ .......(((((((.(((((((((((.......))))).))))))..............(((((((....))..........)))))...)))))))......... (-24.70 = -25.58 + 0.88)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:32:25 2006