Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 16,085,725 – 16,085,819 |
Length | 94 |
Max. P | 0.538729 |
Location | 16,085,725 – 16,085,819 |
---|---|
Length | 94 |
Sequences | 5 |
Columns | 103 |
Reading direction | reverse |
Mean pairwise identity | 81.05 |
Mean single sequence MFE | -37.38 |
Consensus MFE | -25.62 |
Energy contribution | -25.42 |
Covariance contribution | -0.20 |
Combinations/Pair | 1.19 |
Mean z-score | -1.56 |
Structure conservation index | 0.69 |
SVM decision value | 0.01 |
SVM RNA-class probability | 0.538729 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 16085725 94 - 20766785 CGGCAAGCUGG----CCCAGCCAUCCGGCCUAGCAGUCCAGUCAUGCCUCAUGUUCCGUGUGUC-----UGCACAAUGCCACAUGAGGUGGCAGCAUGGCGCA ..((..(((((----((.........)))).)))......(((((((..........((((...-----.))))..((((((.....))))))))))))))). ( -37.10) >DroSim_CAF1 7455 94 - 1 CGGCGAGCUGG----UCCAGCCAUCCGGCCUAGCAGUCCAGUCAUGCCUCAUGUUCCGUGUGUC-----UGCACAAUGCCACAUGAGGUGGCAGCAUGGCGCA ..((..(((((----....(((....))))))))......(((((((..........((((...-----.))))..((((((.....))))))))))))))). ( -36.40) >DroEre_CAF1 7304 94 - 1 CGGCGAGCUGG----CCCAUCCAUCCGGCCUAGCAGCGCAGUCAUGCCUCAUGUUCCGUGUGUC-----UGCACAAUGCCACAUGAGGUGGCAGCAUGGCGCA ..((..(((((----((.........)))).))).))((.(((((((..........((((...-----.))))..((((((.....))))))))))))))). ( -38.90) >DroYak_CAF1 7526 98 - 1 CGGCGAGCUGGCCGGCCCAUCCAUCCGGCCUAGCAGCGCAGUCAUGCCUCAUGUUCCGUGUGUC-----UGCACAAUGCCACAUGAGGUGGCAGCAUGGCGCA ..((..(((((((((.........)))))).))).))((.(((((((..........((((...-----.))))..((((((.....))))))))))))))). ( -44.20) >DroAna_CAF1 7417 86 - 1 CGAGGAGG----------AGUAGACCGUUUUG--GGCCCAGUCAUGCCG-----GCCGUGUGUAUCCAAUACACAAUGCCACAUGAGGUGGCAGCUUGGAGCA ......((----------......))((((..--((((((.(((((..(-----((..(((((((...)))))))..))).)))))..)))..)))..)))). ( -30.30) >consensus CGGCGAGCUGG____CCCAGCCAUCCGGCCUAGCAGCCCAGUCAUGCCUCAUGUUCCGUGUGUC_____UGCACAAUGCCACAUGAGGUGGCAGCAUGGCGCA .(((..(.(((.........))).)..))).....((...(((((((...........(((((.......))))).((((((.....))))))))))))))). (-25.62 = -25.42 + -0.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:32:24 2006