Locus 4924

Sequence ID 2R_DroMel_CAF1
Location 16,077,093 – 16,077,195
Length 102
Max. P 0.936265
window7887

overview

Window 7

Location 16,077,093 – 16,077,195
Length 102
Sequences 5
Columns 102
Reading direction forward
Mean pairwise identity 95.49
Mean single sequence MFE -29.08
Consensus MFE -25.30
Energy contribution -25.74
Covariance contribution 0.44
Combinations/Pair 1.03
Mean z-score -1.66
Structure conservation index 0.87
SVM decision value 1.25
SVM RNA-class probability 0.936265
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 16077093 102 + 20766785
CGCUGACAACCAGUGGUUACGUGUUUGGUCGUAAUUUGUAUAAAUUCAAAAUGUAAACCAUUUCGUGAAACGCCAGCGUUUUAGAGAUGGGGCAACUGUGGU
(((((.....)))))((((((........))))))..........(((...(((...(((((((.(((((((....)))))))))))))).)))....))). ( -28.30)
>DroSec_CAF1 2222 102 + 1
CACUGACAACCAGUGGUUACGUGUUUGGUCGUAAUUUGUUUAAAUUCAAAAUGUAAACCAUUUCGUGAAACGCCAGCGUUUUAGAGAUGGGGCAACUGUGGU
(((((.....))))).((((((.(((((...(((.....)))...))))))))))).(((((((.(((((((....))))))))))))))(....)...... ( -28.90)
>DroSim_CAF1 2203 102 + 1
CACUGACAACCAGUGGUUACGUGUUUGGUCGUAAUUUGUUUAAAUUCAAAAUGUAAACCAUUUCGUGAAACGCCAGCGUUUUAGAGAUGGGGCAACUGUGGU
(((((.....))))).((((((.(((((...(((.....)))...))))))))))).(((((((.(((((((....))))))))))))))(....)...... ( -28.90)
>DroEre_CAF1 2239 102 + 1
CACUGACCACCACUGGUUACGUGUUUGGCCGUAAUUUGCUUAAAUUCAAAAUGUAAACCAUUUCGUGAAACGCCAGCGUUUUAGAGAUGGGGGAAGUGUGGC
((((..((....(..((((((.(.....)))))))..)...................(((((((.(((((((....))))))))))))))))..)))).... ( -29.70)
>DroYak_CAF1 2254 102 + 1
CACUGACAACCACUGGUUACGUGUUCGGCCGUAAUUUGUUUAAAUUCAAAAUGUAAACCAUUUCGUGAAACGCCAGCGUUUUAGAGAUGGGGCAACUGUGGC
.........((((.((((.((....))(((....((((........)))).......(((((((.(((((((....))))))))))))))))))))))))). ( -29.60)
>consensus
CACUGACAACCAGUGGUUACGUGUUUGGUCGUAAUUUGUUUAAAUUCAAAAUGUAAACCAUUUCGUGAAACGCCAGCGUUUUAGAGAUGGGGCAACUGUGGU
(((((.....)))))((((((........))))))..........(((...(((...(((((((.(((((((....)))))))))))))).)))....))). (-25.30 = -25.74 +   0.44)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:32:20 2006