Locus 4921

Sequence ID 2R_DroMel_CAF1
Location 16,071,480 – 16,071,600
Length 120
Max. P 0.773051
window7882

overview

Window 2

Location 16,071,480 – 16,071,600
Length 120
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 86.85
Mean single sequence MFE -28.14
Consensus MFE -17.94
Energy contribution -19.78
Covariance contribution 1.84
Combinations/Pair 1.12
Mean z-score -2.72
Structure conservation index 0.64
SVM decision value 0.53
SVM RNA-class probability 0.773051
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 16071480 120 + 20766785
AAAACAAUUUCGAAAACCCAGAAGACGGCGUUGAACGCGAGCCACGCCCCUCAUCCCAAACAUUUCACACAUGUUUUAAAAAUAACCGAACUUGUGUGCUGUCUUCAGUGAAAAUCGAAU
........(((((.......(((((((((..(((..(((.....)))...))).............(((((.((((...........)))).))))))))))))))........))))). ( -27.26)
>DroSec_CAF1 125212 119 + 1
AAAACAAUUUCGAAAACCCAGAAGACGGCGUUGAACGUGAGCCACGCC-CUCCUCCCAAACAUUUCACACAUGUUUUAAAAAUAAACGAACUUGUGUGCCGUCUUCAGUGAAAAUCGAAU
........(((((.......((((((((((((......(((.......-)))......))).....(((((.((((...........)))).))))))))))))))........))))). ( -28.46)
>DroSim_CAF1 132028 119 + 1
AAAACAAUUUCGAAAACCCAGAAGACGGCGUUGAACGUGAGCCACGCC-CUCCUCCCAAACAUUUCACACAUGUUUUAAAAAUAAACGAACUUGUGUGCCGUCUUCAGUGAAAAUCGAAU
........(((((.......((((((((((((......(((.......-)))......))).....(((((.((((...........)))).))))))))))))))........))))). ( -28.46)
>DroEre_CAF1 132142 119 + 1
AGAACAAUUUCGAAAACGAAGAAGACGGCGAGGAACGUGAGCCACGCC-UUCCUCGCCAACAUUUCACACAUGUUUUAAAAAUAAACGAACUUGUGUGCCGUCUGCUGUGAAAAUCGGAU
........(((((......((.(((((((((((((.(((.....))).-))))))))).......((((((.((((...........)))).))))))..)))).)).......))))). ( -37.92)
>DroYak_CAF1 136723 102 + 1
AAAACAAUUUCAAAAACCUAGAAGA-----------------CACGCC-CUCCACGCCAACAUUUCACACAUGUUUUAAAAAUAAACGAUCUUGUGUGUCGUCUUCUGUGAAAAUCGUAU
.......(((((......(((((((-----------------(..((.-......))........(((((((((((.......)))))....))))))..)))))))))))))....... ( -18.60)
>consensus
AAAACAAUUUCGAAAACCCAGAAGACGGCGUUGAACGUGAGCCACGCC_CUCCUCCCAAACAUUUCACACAUGUUUUAAAAAUAAACGAACUUGUGUGCCGUCUUCAGUGAAAAUCGAAU
........(((((.......(((((((((.......(((.....)))...................(((((.((((...........)))).))))))))))))))........))))). (-17.94 = -19.78 +   1.84)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:32:15 2006