Locus 492

Sequence ID 2R_DroMel_CAF1
Location 2,703,763 – 2,703,859
Length 96
Max. P 0.507081
window936

overview

Window 6

Location 2,703,763 – 2,703,859
Length 96
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 74.91
Mean single sequence MFE -31.06
Consensus MFE -15.10
Energy contribution -14.70
Covariance contribution -0.40
Combinations/Pair 1.18
Mean z-score -1.71
Structure conservation index 0.49
SVM decision value -0.05
SVM RNA-class probability 0.507081
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 2703763 96 + 20766785
AGUCACC------------GCUGAUGGCGAUGAUGAUUAAGAUGAAGAUGAAGUUAUUAUUAUCUGACAAGGGCAUCGCC---GCCAUGGA-AAC----UGCAGUGG-CU---CGCACUU
((((((.------------((..((((((.(((((....((((((.((((....)))).))))))........))))).)---)))))(..-..)----.)).))))-))---....... ( -30.50)
>DroVir_CAF1 7193 93 + 1
AGUUGC------------------CGCUGAUGCUGAUGAUGAUGAAGAUGAAGUUAUUAUUAUCUGACAAGGGCAUCAGC---GCACGGCA-GACUGACUGCUUUAG-CUG----CACUU
.((.((------------------.((((((((((((((((((((........))))))))))).......)))))))))---)))).(((-(.((((.....))))-)))----).... ( -33.21)
>DroSec_CAF1 78 96 + 1
AGUCACC------------GCUGAUGGCGAUGAUGAUGAAGAUGAAGAUGAAGUUAUUAUUAUCUGACAAGGGCAUCGCC---GCCAUGGA-AAC----UGCAGUGG-CU---CGCACUU
((((((.------------((..((((((.(((((.((.((((((.((((....)))).))))))..))....))))).)---)))))(..-..)----.)).))))-))---....... ( -31.10)
>DroMoj_CAF1 8064 102 + 1
AGUUGC---------------AGUGGCUGAUGAUGAUGAAGAUGAAGAUGAAGUUAUUAUUAUCUGACAAGGGCAUCAGCGCCGCACGGCC-AACUGACUGCC-UGG-CUGCAAGCACUU
..((((---------------((((...(((((((((((...(........).)))))))))))...)..(((((((((.(((....))).-..)))).))))-).)-))))))...... ( -33.30)
>DroAna_CAF1 114 110 + 1
AGCUGCCUCUGCCUCUGCCUCUGCCGCUGAUGAUGAUGAAGAUGAAGAUGAAGUUAUUAUUAUCUGACAAGGGCAUCGCC---GCCAUGGAAAAC----UGCAUUGGCCU---CGCACUU
.((.(((..(((.....((...((.((.((((....((.((((((.((((....)))).))))))..))....)))))).---))...)).....----.)))..)))..---.)).... ( -27.20)
>consensus
AGUUGCC_____________CUGACGCUGAUGAUGAUGAAGAUGAAGAUGAAGUUAUUAUUAUCUGACAAGGGCAUCGCC___GCCAUGGA_AAC____UGCAGUGG_CU___CGCACUU
.........................(((((((.......((((((.((((....)))).))))))........)))))))........................................ (-15.10 = -14.70 +  -0.40)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:40:03 2006