Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 16,068,996 – 16,069,103 |
Length | 107 |
Max. P | 0.635534 |
Location | 16,068,996 – 16,069,103 |
---|---|
Length | 107 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 85.68 |
Mean single sequence MFE | -34.12 |
Consensus MFE | -23.58 |
Energy contribution | -24.90 |
Covariance contribution | 1.32 |
Combinations/Pair | 1.09 |
Mean z-score | -1.85 |
Structure conservation index | 0.69 |
SVM decision value | 0.21 |
SVM RNA-class probability | 0.635534 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 16068996 107 - 20766785 GAACUGCAUAUUAUUAAUUUAAUGUGCGCUCGUUUCGAAUUCGGAGU-CCGUGGAUGGGAAGUGGGCU-----CCCAGUUUCCAA-------UUCUUGGUGCACUUUUCUGGGAAACAUG ((..(((((((((......))))))))).))(((((....((((((.-(((.(((((((((.(((...-----.))).))))).)-------))).))).......)))))))))))... ( -32.30) >DroSec_CAF1 122809 107 - 1 GAACUGCAUAUUAUUAAUUUAAUGUGCGCUCGUUUCGAAUUCGGAGU-UCGUGGAUGGGAAGUGGGCU-----CUCAGUGCCCAA-------UGCUUGGUGCACUUUUCUGGGAAACAUG .....((((((((......))))))))(((((((((..((((((...-.).)))))..)))))))))(-----(((((((((((.-------....))).)))).....)))))...... ( -31.80) >DroSim_CAF1 126660 107 - 1 GAACUGCAUAUUAUUAAUUUAAUGUGCGCUCGUUUCGAAUUCGGAGU-UCGUGGAUGGGAAGUGGGCU-----CCCAGUUCCCAA-------UGCCUGGUGCACUUUUCUGGGAAACAUG (((((((((((((......)))))))).......(((....))))))-))(((..((((((.(((...-----.))).)))))).-------..((..(.........)..))...))). ( -35.60) >DroEre_CAF1 129571 105 - 1 GAACUGCAUAUUAUUAAUUUAAUGUGCGCUCGUCUCGAAUUCGGAGUUUCGGGGAUGGGAAGUGAGUG-AG-------UUCCCAG-------UUCUGGGUGCACUUUUCUGAGAAACAUG .....((((((((......)))))))).(((.(((((((........)))))))...((((..(((((-..-------..((((.-------...))))..))))))))))))....... ( -31.30) >DroYak_CAF1 134215 120 - 1 GAACUGCAUAUUAUUAAUUUAAUGUGCGCUCGUCUCGAAUUCGGUGUUUUGGGGAUGGGAAGUGAGUUCAGUUCCCAGUUCCCAGUUCUCUGUUCUCGUUGCACUUUUCUGAGAAACAUG ((..(((((((((......))))))))).))((..(((...(((.(..(((((((((((((.((....)).)))))).)))))))..).)))...)))..)).(((....)))....... ( -39.60) >consensus GAACUGCAUAUUAUUAAUUUAAUGUGCGCUCGUUUCGAAUUCGGAGU_UCGUGGAUGGGAAGUGGGCU_____CCCAGUUCCCAA_______UUCUUGGUGCACUUUUCUGGGAAACAUG ((..(((((((((......))))))))).))(((((....((((((.........((((((.((((.......)))).)))))).............(.....)..)))))))))))... (-23.58 = -24.90 + 1.32)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:32:12 2006