Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 16,065,002 – 16,065,131 |
Length | 129 |
Max. P | 0.984941 |
Location | 16,065,002 – 16,065,097 |
---|---|
Length | 95 |
Sequences | 5 |
Columns | 95 |
Reading direction | forward |
Mean pairwise identity | 97.68 |
Mean single sequence MFE | -26.90 |
Consensus MFE | -24.14 |
Energy contribution | -23.98 |
Covariance contribution | -0.16 |
Combinations/Pair | 1.11 |
Mean z-score | -1.96 |
Structure conservation index | 0.90 |
SVM decision value | 1.96 |
SVM RNA-class probability | 0.983938 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 16065002 95 + 20766785 UAUUCGCAGUUCGUAAGAGCCAAAAACUGGUAUUCGAGGUGCCGAGAUGCGCAUUUUAUAUGCCACUACGAUCGGCUAAUCCACGAAUCCGAAAC ..(((...((((....))))........((.(((((.((.(((((..((.((((.....))))))......)))))....)).)))))))))).. ( -28.10) >DroSec_CAF1 118632 95 + 1 UAUUCGCAGUUCGUAAGAGCCAAAAACUGGUAUUCGAGGUGCCGAGAUGCGCAUUUUAUAUGCCACUACGAUCGGCUAAUCCACGAAUCCGAAAC ..(((...((((....))))........((.(((((.((.(((((..((.((((.....))))))......)))))....)).)))))))))).. ( -28.10) >DroSim_CAF1 122644 95 + 1 UAUUCGCAGUUCGUAAGAGCCAAAAACUGGUAUUCGAGGUGCCGAGAUGCGCAUUUUAUAUGCCACUACGAUCGGCUAAUCCACGAAUCCGAAAC ..(((...((((....))))........((.(((((.((.(((((..((.((((.....))))))......)))))....)).)))))))))).. ( -28.10) >DroEre_CAF1 125489 95 + 1 UAUUCGCAGUUCGUAAGAGCCAAAAACUGGUAUUCGAAGUGCCGAGAUGCGCGUUUUAUAUGCCACUACGAUCGGCUAAUCCACGAAUCCGAAAC ..((((..((((((...((((......((((((.....))))))((.((.((((.....))))))))......)))).....)))))).)))).. ( -24.30) >DroYak_CAF1 130029 95 + 1 UAUUCGCAGUUCGUAAGAGCCAAAAACUGGUAUUCGGAGUGCCGAGAUGCGCAUUUAAUAUGCCACUACGAUCGGCUAAUCCACGAAUCCAAAAC ........((((....)))).......(((.(((((((..(((((..((.((((.....))))))......)))))...)))..))))))).... ( -25.90) >consensus UAUUCGCAGUUCGUAAGAGCCAAAAACUGGUAUUCGAGGUGCCGAGAUGCGCAUUUUAUAUGCCACUACGAUCGGCUAAUCCACGAAUCCGAAAC ..((((..((((((...((((......((((((..(((((((........)))))))..))))))........)))).....)))))).)))).. (-24.14 = -23.98 + -0.16)
Location | 16,065,030 – 16,065,131 |
---|---|
Length | 101 |
Sequences | 5 |
Columns | 101 |
Reading direction | forward |
Mean pairwise identity | 97.82 |
Mean single sequence MFE | -25.07 |
Consensus MFE | -24.41 |
Energy contribution | -24.65 |
Covariance contribution | 0.24 |
Combinations/Pair | 1.04 |
Mean z-score | -1.67 |
Structure conservation index | 0.97 |
SVM decision value | 1.99 |
SVM RNA-class probability | 0.984941 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 16065030 101 + 20766785 GGUAUUCGAGGUGCCGAGAUGCGCAUUUUAUAUGCCACUACGAUCGGCUAAUCCACGAAUCCGAAACUUGUUUUUACAUUUUGCAUUCAUAAACAAGGUAA ((.(((((.((.(((((..((.((((.....))))))......)))))....)).)))))))....(((((((.................))))))).... ( -26.33) >DroSec_CAF1 118660 101 + 1 GGUAUUCGAGGUGCCGAGAUGCGCAUUUUAUAUGCCACUACGAUCGGCUAAUCCACGAAUCCGAAACUUGUUUUUACAUUUUGCAUUCAUAAACAAGGUAA ((.(((((.((.(((((..((.((((.....))))))......)))))....)).)))))))....(((((((.................))))))).... ( -26.33) >DroSim_CAF1 122672 101 + 1 GGUAUUCGAGGUGCCGAGAUGCGCAUUUUAUAUGCCACUACGAUCGGCUAAUCCACGAAUCCGAAACUUGUUUUUACAUUUUGCAUUCAUAAACAAGGUAA ((.(((((.((.(((((..((.((((.....))))))......)))))....)).)))))))....(((((((.................))))))).... ( -26.33) >DroEre_CAF1 125517 101 + 1 GGUAUUCGAAGUGCCGAGAUGCGCGUUUUAUAUGCCACUACGAUCGGCUAAUCCACGAAUCCGAAACUUGUUUUUACAUUUUGCAUUCAUAAACAAGGUAA ((.(((((..(.(((((..((.((((.....))))))......)))))....)..)))))))....(((((((.................))))))).... ( -21.73) >DroYak_CAF1 130057 101 + 1 GGUAUUCGGAGUGCCGAGAUGCGCAUUUAAUAUGCCACUACGAUCGGCUAAUCCACGAAUCCAAAACUUGUUUUUACAUUUUGCAUUCAUAAACAAGGUAA ((.(((((((..(((((..((.((((.....))))))......)))))...)))..))))))....(((((((.................))))))).... ( -24.63) >consensus GGUAUUCGAGGUGCCGAGAUGCGCAUUUUAUAUGCCACUACGAUCGGCUAAUCCACGAAUCCGAAACUUGUUUUUACAUUUUGCAUUCAUAAACAAGGUAA ((.(((((.((.(((((..((.((((.....))))))......)))))....)).)))))))....(((((((.................))))))).... (-24.41 = -24.65 + 0.24)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:32:05 2006