Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 16,060,831 – 16,060,925 |
Length | 94 |
Max. P | 0.984630 |
Location | 16,060,831 – 16,060,925 |
---|---|
Length | 94 |
Sequences | 6 |
Columns | 96 |
Reading direction | forward |
Mean pairwise identity | 96.75 |
Mean single sequence MFE | -24.63 |
Consensus MFE | -23.22 |
Energy contribution | -23.25 |
Covariance contribution | 0.03 |
Combinations/Pair | 1.04 |
Mean z-score | -1.53 |
Structure conservation index | 0.94 |
SVM decision value | 1.98 |
SVM RNA-class probability | 0.984630 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 16060831 94 + 20766785 --AAACUCUCAACUCGGCGCACAGUGAGUGCAAAAAAUGUGUGCUCGUUGCGUUGUAAUUGCAUUUGCUAUUGCUUUGUUGUUGCUUUGCAAAAAA --............(((((((((.((....)).....))))))).))(((((..(((((.(((...((....))..))).)))))..))))).... ( -26.00) >DroSec_CAF1 114479 94 + 1 --AAACUCUCAACUCGGCGCACAGUGAGUGCAAAAAAUGUGUGCUCGUUGCGUUGUAAUUGCAUUUGCUAUUGCUUUGUUGUUGCCUUGCAAAAAA --............(((((((((.((....)).....))))))).))(((((..(((((.(((...((....))..))).)))))..))))).... ( -25.10) >DroSim_CAF1 118516 94 + 1 --AAACUCUCAACUCGGCGCACAGUGAGUGCAAAAAAUGUGUGCUCGUUGCGUUGUAAUUGCAUUUGCUAUUGCUUUGUUGUUGCCUUGCAAAAAA --............(((((((((.((....)).....))))))).))(((((..(((((.(((...((....))..))).)))))..))))).... ( -25.10) >DroEre_CAF1 121235 93 + 1 --AAACUCUCAACUCGGCGCACAGUGAGUGCAAAAAAUGUGUGCUCGUUGCGUUGUAAUUGCAUUUGCUAUUGCUUUGUUGUUGC-UUGCAAAAAA --............(((((((((.((....)).....))))))).))(((((..(((((.(((...((....))..))).)))))-.))))).... ( -24.10) >DroYak_CAF1 125754 93 + 1 --AAACUCUCAACUCGGCGCACAGUGAGUGCAAAAAAUGUGUGCUCGUUGCGUUGUAAUUGCAUUUGCUAUUGCUUUGUUGUUGC-UUGCAAAAAA --............(((((((((.((....)).....))))))).))(((((..(((((.(((...((....))..))).)))))-.))))).... ( -24.10) >DroAna_CAF1 124436 95 + 1 CAAAACUCUCAGCUCGGCGCACAGUGAGUGCAAAAAAUGUGUGCUCGUUGCGUUGUAAUUGCAUUUGCUUUUGCUUUGUUGUUAC-UUACAAAAAU ...........((.(((((((((.((....)).....))))))).))..))((.(((((.(((...((....))..))).)))))-..))...... ( -23.40) >consensus __AAACUCUCAACUCGGCGCACAGUGAGUGCAAAAAAUGUGUGCUCGUUGCGUUGUAAUUGCAUUUGCUAUUGCUUUGUUGUUGC_UUGCAAAAAA ..............(((((((((.((....)).....))))))).))(((((..(((((.(((...((....))..))).)))))..))))).... (-23.22 = -23.25 + 0.03)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:32:01 2006