Locus 4912

Sequence ID 2R_DroMel_CAF1
Location 16,058,345 – 16,058,455
Length 110
Max. P 0.663607
window7868

overview

Window 8

Location 16,058,345 – 16,058,455
Length 110
Sequences 6
Columns 110
Reading direction reverse
Mean pairwise identity 86.18
Mean single sequence MFE -36.42
Consensus MFE -29.20
Energy contribution -30.15
Covariance contribution 0.95
Combinations/Pair 1.15
Mean z-score -2.06
Structure conservation index 0.80
SVM decision value 0.27
SVM RNA-class probability 0.663607
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 16058345 110 - 20766785
AUUAUAUAGUCGACUCUAGGACAAUUUCUCAUCCAGUGUAGUUGUUGGCACUGGGAUUGCCCAGCGAAGCGGCAUAAGCUGCUUGGGCAACAUCCCUAAAGCUCCUCGGC
........(((((((.((((...........((((((((........)))))))).(((((((....((((((....)))))))))))))....)))).))....))))) ( -39.30)
>DroSec_CAF1 112708 110 - 1
AUUAUAUAGUCGACUCCAGGACAAUUUCUCAUCCAGUGUAGUUGUUGGCACUGGGAUUGCCCAGCGAAGCGGCAUAAGCUGCUUGGGCAACAUCUCUAAAGCUCCUCGGC
........(((((.....((((.........((((((((........)))))))).(((((((....((((((....)))))))))))))..........).)))))))) ( -36.40)
>DroSim_CAF1 116706 110 - 1
AUUAUAUAGUCGACUCCAGGACAAUUUCUCAUCCAGUGUAGUUGUUGGCACUGGGAUUGCCCAGCGAAGCGGCAUAAGCUGCUUGGGCAACAUCCCUAAAGCUCCUUGGC
...............(((((.((((..(((((...))).))..))))((...(((((((((((....((((((....))))))))))))..)))))....))..))))). ( -36.10)
>DroEre_CAF1 119346 110 - 1
AUUAUGUUGUCUGCUCGCGGACAAUUUCUCAUCCAGUGUAGUUGUUGGCACUGCGAUUGCCCAGCGAAGCGGCAUAAGCCGCUUGGGCAACAUCCCUAAAGCUCCUCGGC
.....((((((((....))))))))......((((((((........)))))).))(((((((....((((((....)))))))))))))..........(((....))) ( -38.90)
>DroYak_CAF1 123914 110 - 1
AUUAUUUUGUCUAUUCCCGUACAAUUUCUCAUCCAGUGUAGUUGUUGGCACUGGGAUUGCCCAGCGAAGCGGCAUAAGCCGCUUGGGCAACAUCCCUAAAGCUCCUCGGC
................(((..((((..(((((...))).))..))))((...(((((((((((....((((((....))))))))))))..)))))....))....))). ( -35.40)
>DroAna_CAF1 123243 99 - 1
-----------GACUUUGUAAAUAUUUUCUGCUCAGUGUAGUUGUUGGCACUGGCGUUGCCCUGCCAAGCGGCAUAAGCUGCUUGGGCUACAUCUCCAAAGCACCUCGGC
-----------(.(((((............((.((((((........))))))))((.((((....(((((((....))))))))))).)).....))))))........ ( -32.40)
>consensus
AUUAUAUAGUCGACUCCAGGACAAUUUCUCAUCCAGUGUAGUUGUUGGCACUGGGAUUGCCCAGCGAAGCGGCAUAAGCUGCUUGGGCAACAUCCCUAAAGCUCCUCGGC
........(((((..................((((((((........)))))))).(((((((....((((((....)))))))))))))...............))))) (-29.20 = -30.15 +   0.95)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:32:00 2006