Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 16,045,522 – 16,045,625 |
Length | 103 |
Max. P | 0.529549 |
Location | 16,045,522 – 16,045,625 |
---|---|
Length | 103 |
Sequences | 5 |
Columns | 103 |
Reading direction | forward |
Mean pairwise identity | 96.89 |
Mean single sequence MFE | -16.46 |
Consensus MFE | -14.32 |
Energy contribution | -14.00 |
Covariance contribution | -0.32 |
Combinations/Pair | 1.07 |
Mean z-score | -1.30 |
Structure conservation index | 0.87 |
SVM decision value | -0.01 |
SVM RNA-class probability | 0.529549 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 16045522 103 + 20766785 CUUAAUCUAAGCCGCCUAAAUCUCUGAUAAACAGCAAACUAUUAUUGGCUUCCAUCAAAUUAGAAACUAAUUUAUUAGUUUAUUGGUUCAAAAUGAUUGAGUA (((((((.((((((.........(((.....)))...........))))))......(((((((((((((....))))))).))))))......))))))).. ( -16.45) >DroSec_CAF1 100305 103 + 1 CUUAAUCUAAGCCGCCUAAAUCUCUGAUAAACAGCAAUCUAUUAUUGGCUUCCAUCAAAUUAGAAACUAAUUUAUUAGUUUAUUGGUUCAAAAUGAUUGAGUA (((((((......(((.......((((((((......((((...((((......))))..))))......))))))))......))).......))))))).. ( -16.54) >DroSim_CAF1 103657 103 + 1 CUUAAUCUAAGCCGCCUAAAUCUCUGAUAAACAGCAAACUAUUAUUGGCUUCCAUCAAAUUAGAAACUAAUUUAUUAGUUUAUUGGUUCAAAAUGAUUGAGUA (((((((.((((((.........(((.....)))...........))))))......(((((((((((((....))))))).))))))......))))))).. ( -16.45) >DroEre_CAF1 106978 103 + 1 CUUAAUCUAAGCCGCCUAAAUCUCCAAUAAACAGCAAACUAUUACUAGCUUCCAUCAAAUUAGAAACUAAUUUAUUAGUUUAUUGGUUCAAAAUGAUUGAGCA (((((((..((....))......((((((((((((............)))......(((((((...)))))))....)))))))))........))))))).. ( -16.40) >DroYak_CAF1 110886 103 + 1 CUUAAUCUAAGCCGCCUAAAUCUCUGAUAAACAGCAAUCUAUUAUUGGCUACCAUCAAAUUAGAAACUAAUUUAUUAGUUUAUUGGUUCAAAAUGAUUGAGCA (((((((..(((((.........(((.....)))...........)))))((((..((((((((((....))).)))))))..)))).......))))))).. ( -16.45) >consensus CUUAAUCUAAGCCGCCUAAAUCUCUGAUAAACAGCAAACUAUUAUUGGCUUCCAUCAAAUUAGAAACUAAUUUAUUAGUUUAUUGGUUCAAAAUGAUUGAGUA (((((((..((....))......((((((((((((............)))......(((((((...)))))))....)))))))))........))))))).. (-14.32 = -14.00 + -0.32)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:31:59 2006