Locus 491

Sequence ID 2R_DroMel_CAF1
Location 2,703,499 – 2,703,598
Length 99
Max. P 0.896817
window935

overview

Window 5

Location 2,703,499 – 2,703,598
Length 99
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 80.19
Mean single sequence MFE -29.59
Consensus MFE -16.41
Energy contribution -17.33
Covariance contribution 0.92
Combinations/Pair 1.19
Mean z-score -2.61
Structure conservation index 0.55
SVM decision value 0.99
SVM RNA-class probability 0.896817
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 2703499 99 + 20766785
AGCUUUUCCCUGGCAUUGAUCUCAUAAAUCUGAGCCGAGGCCUC--------GCUUUUUGUC-GACUCCAUUA------------AGGGGUCUGCAAGCACUAAGCUAAAAGCAGCUUAA
((((.......(((.(((..((((......)))).))).)))..--------(((((((((.-((((((....------------.)))))).)))(((.....)))))))))))))... ( -30.00)
>DroSec_CAF1 18391 99 + 1
AGCUUUUCCCUGGCAUUGAUCUCAUAAAUAUGAGCCGAGGCCUC--------GCUUUUUGUC-GAUUCCAUUA------------AGGGGUCUGCGAGCACUAAGCUAAGAGCAGCUUAA
.((((((....(((.(((..(((((....))))).))).)))..--------(((((((((.-((((((....------------.)))))).)))))....)))).))))))....... ( -28.30)
>DroSim_CAF1 15796 99 + 1
AGCUUUUCCCUGGCAUUGAUCUCAUAAAUAUGAGCCGAGGCCUC--------GCUUUUUGUC-GACUCCAUUA------------AGGGGUCUGCGAGCACUAAGCUAAGAGCAGCUUAA
.((((((....(((.(((..(((((....))))).))).)))..--------(((((((((.-((((((....------------.)))))).)))))....)))).))))))....... ( -30.70)
>DroEre_CAF1 16010 99 + 1
AGCUUUUCUAUGGCAUUGAUCUCAUAAAUAUGAGUCGAGGCCUC--------GCUUUUUGUC-GACUCCAUUA------------AGGGGUCUGCGAGCACUAAGCUGAAAACAGCUUAA
.((((......(((.((((.(((((....))))))))).)))..--------.......((.-((((((....------------.)))))).))))))..(((((((....))))))). ( -35.20)
>DroWil_CAF1 20149 118 + 1
AUCAUUCCUUUAU--UUUUUCAAAACAAUAUGAGAAAAUACCUCAAAAAUAUGCUUACUCUCCAAUUCCAUUAGUUUGCCGCAAAAGUAGACUAAGAGCACUAAGCUAAAAGCAGCUUAA
..........(((--(((((((........))))))))))...........(((((..............(((((((((.......)))))))))))))).((((((......)))))). ( -21.43)
>DroYak_CAF1 15655 99 + 1
AGCUUUUCCCUGGCAUUGAUCUCAUAAAUACGAGCCGAGGCCCC--------GCUUUUUGUC-GACUCCAUUA------------AGGGGUCGGCGAGCACUAAGCUAAAAACAGCUUAA
.((((......(((.(((..(((........))).))).)))..--------.......(((-((((((....------------.)))))))))))))..((((((......)))))). ( -31.90)
>consensus
AGCUUUUCCCUGGCAUUGAUCUCAUAAAUAUGAGCCGAGGCCUC________GCUUUUUGUC_GACUCCAUUA____________AGGGGUCUGCGAGCACUAAGCUAAAAGCAGCUUAA
...........(((.(((..(((((....))))).))).)))..........((((.......((((((.................))))))...))))..((((((......)))))). (-16.41 = -17.33 +   0.92) 

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript


Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:40:02 2006