Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 2,703,499 – 2,703,598 |
Length | 99 |
Max. P | 0.896817 |
Location | 2,703,499 – 2,703,598 |
---|---|
Length | 99 |
Sequences | 6 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 80.19 |
Mean single sequence MFE | -29.59 |
Consensus MFE | -16.41 |
Energy contribution | -17.33 |
Covariance contribution | 0.92 |
Combinations/Pair | 1.19 |
Mean z-score | -2.61 |
Structure conservation index | 0.55 |
SVM decision value | 0.99 |
SVM RNA-class probability | 0.896817 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 2703499 99 + 20766785 AGCUUUUCCCUGGCAUUGAUCUCAUAAAUCUGAGCCGAGGCCUC--------GCUUUUUGUC-GACUCCAUUA------------AGGGGUCUGCAAGCACUAAGCUAAAAGCAGCUUAA ((((.......(((.(((..((((......)))).))).)))..--------(((((((((.-((((((....------------.)))))).)))(((.....)))))))))))))... ( -30.00) >DroSec_CAF1 18391 99 + 1 AGCUUUUCCCUGGCAUUGAUCUCAUAAAUAUGAGCCGAGGCCUC--------GCUUUUUGUC-GAUUCCAUUA------------AGGGGUCUGCGAGCACUAAGCUAAGAGCAGCUUAA .((((((....(((.(((..(((((....))))).))).)))..--------(((((((((.-((((((....------------.)))))).)))))....)))).))))))....... ( -28.30) >DroSim_CAF1 15796 99 + 1 AGCUUUUCCCUGGCAUUGAUCUCAUAAAUAUGAGCCGAGGCCUC--------GCUUUUUGUC-GACUCCAUUA------------AGGGGUCUGCGAGCACUAAGCUAAGAGCAGCUUAA .((((((....(((.(((..(((((....))))).))).)))..--------(((((((((.-((((((....------------.)))))).)))))....)))).))))))....... ( -30.70) >DroEre_CAF1 16010 99 + 1 AGCUUUUCUAUGGCAUUGAUCUCAUAAAUAUGAGUCGAGGCCUC--------GCUUUUUGUC-GACUCCAUUA------------AGGGGUCUGCGAGCACUAAGCUGAAAACAGCUUAA .((((......(((.((((.(((((....))))))))).)))..--------.......((.-((((((....------------.)))))).))))))..(((((((....))))))). ( -35.20) >DroWil_CAF1 20149 118 + 1 AUCAUUCCUUUAU--UUUUUCAAAACAAUAUGAGAAAAUACCUCAAAAAUAUGCUUACUCUCCAAUUCCAUUAGUUUGCCGCAAAAGUAGACUAAGAGCACUAAGCUAAAAGCAGCUUAA ..........(((--(((((((........))))))))))...........(((((..............(((((((((.......)))))))))))))).((((((......)))))). ( -21.43) >DroYak_CAF1 15655 99 + 1 AGCUUUUCCCUGGCAUUGAUCUCAUAAAUACGAGCCGAGGCCCC--------GCUUUUUGUC-GACUCCAUUA------------AGGGGUCGGCGAGCACUAAGCUAAAAACAGCUUAA .((((......(((.(((..(((........))).))).)))..--------.......(((-((((((....------------.)))))))))))))..((((((......)))))). ( -31.90) >consensus AGCUUUUCCCUGGCAUUGAUCUCAUAAAUAUGAGCCGAGGCCUC________GCUUUUUGUC_GACUCCAUUA____________AGGGGUCUGCGAGCACUAAGCUAAAAGCAGCUUAA ...........(((.(((..(((((....))))).))).)))..........((((.......((((((.................))))))...))))..((((((......)))))). (-16.41 = -17.33 + 0.92)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:40:02 2006