Locus 4908

Sequence ID 2R_DroMel_CAF1
Location 16,033,343 – 16,033,454
Length 111
Max. P 0.594462
window7861

overview

Window 1

Location 16,033,343 – 16,033,454
Length 111
Sequences 5
Columns 111
Reading direction forward
Mean pairwise identity 87.40
Mean single sequence MFE -29.40
Consensus MFE -21.98
Energy contribution -22.14
Covariance contribution 0.16
Combinations/Pair 1.10
Mean z-score -1.62
Structure conservation index 0.75
SVM decision value 0.12
SVM RNA-class probability 0.594462
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 16033343 111 + 20766785
AUUAUUACAAGCAUUAUGACCGGAUUUCAUUGGGCUGAGAGGAAUGAUUCGGGGAAUGAGUAUGGCUAUAGGGAUAGGGAUGGGGAUAUAGACAAUGUCCUGUCCAUGUCG
.((((..((.((.((((..((.((..(((((...((....))))))).)).))..)))))).))...)))).((((.(((((((.((((.....))))))))))).)))). ( -29.50)
>DroSec_CAF1 88375 111 + 1
AUUAUUACAAGCAUUAUGACCGGAUUUCAUUGGGCUGAGAGGAAUGAUUCGGGGAAUGAGUAUGGCUAUAGGGAUAGGGAUGGGGAUAUAGACAAUGUCCUGUCCGUGUCG
.((((..((.((.((((..((.((..(((((...((....))))))).)).))..)))))).))...)))).((((.(((((((.((((.....))))))))))).)))). ( -31.60)
>DroSim_CAF1 91649 111 + 1
AUUAUUACAAGCAUUAUGACCGGAUUUCAUUGGGCUGAGAGGAAUGAUUCGGGGAAUGAGUAUGGCUAUAGGGAUAGGGAUGGGGAUAUAGACAAUGUCCUGUCCAUGUCG
.((((..((.((.((((..((.((..(((((...((....))))))).)).))..)))))).))...)))).((((.(((((((.((((.....))))))))))).)))). ( -29.50)
>DroEre_CAF1 94813 96 + 1
AUUAUUACAAGCAUUAUGACCGGAUUUCAUUGGGAAG---GGAAUGAUGCGGGGAAUGGGC------------AUAGCGAUGGGGACAUAGACAAUGUCCUGUCCAUGUCG
......(((.(((((((..((...((((....)))))---)..)))))))..(((..((((------------((.((.(((....))).).).))))))..))).))).. ( -28.50)
>DroYak_CAF1 98210 96 + 1
AUUAUUACAAGCAUUAUGACCGGAUUUCAUUGGGCUG---GGAAUGAUUCGGGCGAUGGGU------------AUAGGGAUGGGGACAUGGACAAUGUCCUGUCCAUGUCG
...........((((....((....((((((..(((.---(((....))).))))))))).------------...))))))..((((((((((......)))))))))). ( -27.90)
>consensus
AUUAUUACAAGCAUUAUGACCGGAUUUCAUUGGGCUGAGAGGAAUGAUUCGGGGAAUGAGUAUGGCUAUAGGGAUAGGGAUGGGGAUAUAGACAAUGUCCUGUCCAUGUCG
..........((.((((..((.((..(((((...........))))).)).))..))))))...........((((.(((((((.((((.....))))))))))).)))). (-21.98 = -22.14 +   0.16)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:31:53 2006